Pseudoalteromonas piscicida: B1L02_16050
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Entry
B1L02_16050 CDS
T04942
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B1L02_16050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppis03021
]
B1L02_16050
Transcription machinery [BR:
ppis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B1L02_16050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
ASD68375
UniProt:
A0A0F4P7J7
LinkDB
All DBs
Position
1:3490831..3492681
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AA seq
616 aa
AA seq
DB search
MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIQVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIQIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEMRLSDIVSGFFDPNAIEEDEAPISA
THIGSELSDEDLDDEDDDEDDDDDDSEEGDSGPDPEEAREHFEQLRTLYNKAREIFESKG
RSHPDAKAAIQEIGDHFRTFKLVPKQFDRMVNNMRDMMDKVRVQERIIMKQAVQIAKVPK
KVFVKHFANNETDTAWIDAEIASGEKHSAKLAEVKPEIERCVNKLKAFEDSTGLSIERIK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPS
PEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPIDSATMES
LRGATNEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSDLLKSFLDVKG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctcctcagtcacaactcaaacttctgattcagaaaggtaaagagcaaggt
tatttaacttttgcagaagttaacgatcatcttccacaagacatcatagactcagatcag
gtagaagatatcatcagcatgatcaacgatatgggtattcaggtctctgaaaatgcgcct
gatgctgacgagttgatgatgcaagaaacaacaacagatgaggatgctgcggaagcagcg
gctgcggctttagcaacagtagaaaaagaaattggccgcacaactgaccctgttcgtatg
tatatgcgtgaaatgggtacggttgaacttctaactcgtgaaggcgaaatccaaatcgct
aagcgtattgaagaagggatcaaccaagtacagatttctgttgcagaataccctgaagcg
attacttacctgctagagcaatgggataagtacgaagcagaagagatgcgcctaagcgac
attgtttctggtttctttgatcctaatgcaatcgaggaagacgaagcaccaatttcagca
acacacatcggttctgagctaagtgatgaagacttagatgacgaagatgatgatgaagat
gatgacgatgatgactcagaagaaggcgattcaggtccagatcctgaagaagctcgtgag
cattttgaacaacttcgtacgctgtacaataaagcgcgagaaatttttgaaagtaaaggt
cgctcgcaccctgatgcgaaagctgcaattcaggaaatcggcgatcacttccgtactttc
aagttagttcctaagcaattcgaccgcatggtaaataacatgcgcgacatgatggataaa
gtgcgtgttcaagaacgcatcatcatgaaacaagcagttcagattgccaaggttccaaaa
aaggttttcgttaagcactttgctaacaatgaaaccgataccgcatggatcgatgctgaa
attgcatcaggtgaaaaacactcagcaaaactggctgaagtaaaacctgaaatcgagcgt
tgtgttaacaagcttaaagcgtttgaagatagcacaggtcttagcattgagcgtattaaa
gacatcaaccgtcgcatgagtattggtgaagcaaaagctcgccgtgcgaagaaagagatg
gttgaagcgaacttacgtcttgtaatttcaatcgctaaaaagtataccaaccgtggtcta
cagttcttggatctgatccaagaaggtaacatcggtctgatgaaagcggttgataaattt
gaataccgtcgtggttataagttttcaacatacgcaacttggtggatccgtcaggcgatt
actcgctcgattgcggatcaggcaagaactatccgtattccagtgcatatgattgaaaca
attaacaagctgaatcgtatctctcgtcaaatgctacaggaaatgggccgtgagccaagt
cctgaagagttggcagagcgtatgatgatgcctgaagacaagatccgcaaagtgttaaag
atcgccaaagagccaatctcaatggagacgccaatcggtgatgatgaagattcacatctt
ggtgactttatcgaagacactactattgagtcgccgattgattcagcaacgatggaaagt
cttcgtggcgcgaccaacgaagtgctggcaggccttaccgctcgtgaagccaaagtacta
cgtatgcgtttcggtatcgatatgaatacagaccacacgttagaagaagtgggtaaacag
tttgatgtaacacgtgagcgtattcgtcagattgaagctaaagcgctacgtaagctgcgc
cacccttctcgctcagatctattaaagagctttttagacgttaagggctaa
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