Pseudoalteromonas piscicida: B1L02_20420
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Entry
B1L02_20420 CDS
T04942
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppis
Pseudoalteromonas piscicida
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppis03016
]
B1L02_20420 (rnd)
Enzymes [BR:
ppis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
B1L02_20420 (rnd)
Transfer RNA biogenesis [BR:
ppis03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
B1L02_20420 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ASD69262
UniProt:
A0AAD0RLR8
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All DBs
Position
2:complement(424971..426101)
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AA seq
376 aa
AA seq
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MQYQVIESQTALDEFVLSISKAKVLAVDTEFMRRRTLYPEIALLQIFDGDHLALIDPLAD
MDFSRLWTLFADTSVLKVLHSPSEDIEVFLKFAGFIPSPIFDTQFALQLLGEGSCIGFAN
MVKQLRDVEIDKSESRTDWLRRPLTQSQLDYAASDVYHLLPCFETIQTRVNEKQLFNIVL
QESELLAQKRSFRQPDEVLYLDVKNVWQLKPRDLAALKELAAWRRAKAEKKNLALNFVLK
EHNMVEIAKRRPSSLGSLRNVPGVEPMEVNRSGKEILACIEKTKEVSEQDCPQRVKRLID
FKGYKAACKDIKHIISEIAKANDIPVDVFASKKQINQVISWSWKKSPEEKQLLMKPDLAL
GWRAELVGDKLDSWWQ
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtatcaagttattgaaagccaaacagcactagatgaatttgtcttgtctatttcg
aaagccaaagtgcttgccgtcgacaccgaattcatgcgtcgccgcaccttgtacccagaa
attgctttgttacaaatctttgatggtgaccatcttgcccttatcgatccgctagccgat
atggattttagtaggctttggacattatttgccgataccagtgttttaaaagtgcttcac
tctccatcagaagatatcgaagtatttctaaaatttgcaggctttatcccatcaccaata
ttcgatacccagtttgctttacaactgttaggtgagggtagttgtattggttttgctaat
atggtgaagcaacttagagacgtagaaattgacaaaagtgaatccagaacggattggtta
cgccgccctttgactcaaagccaattagattacgccgcctccgatgtatatcatttactg
ccatgttttgagactattcaaacgcgagtaaacgagaagcagttatttaacatagtgctt
caagagagtgagttgcttgcccaaaagagaagcttccgacagcctgatgaagtgctttat
cttgatgtaaaaaacgtatggcagctcaaacctagagatcttgctgccttaaaagaactt
gcagcttggcgcagagccaaggctgagaaaaagaacttagcgctaaatttcgtgcttaaa
gaacataacatggtagaaatcgctaaacgccgcccaagctcattgggcagtttacgcaat
gttccaggtgttgaaccgatggaagtcaatcgctctggtaaagaaattctcgcctgtata
gaaaaaacaaaagaagtgagtgaacaggattgtccacaacgcgtaaaaagacttatcgac
tttaaagggtataaggcagcgtgcaaggatattaaacatattatttccgaaatcgccaag
gctaatgacatcccggttgatgtgtttgcttcgaaaaaacaaatcaatcaggtgatcagc
tggtcttggaaaaagtcaccggaagaaaagcaattgctgatgaaacccgatcttgcgtta
ggctggagagccgagcttgttggagataagctagacagttggtggcagtaa
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