Pseudoalteromonas piscicida: B1L02_20700
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Entry
B1L02_20700 CDS
T04942
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1L02_20700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppis03019
]
B1L02_20700
03400 DNA repair and recombination proteins [BR:
ppis03400
]
B1L02_20700
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1L02_20700
Messenger RNA biogenesis [BR:
ppis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B1L02_20700
DNA repair and recombination proteins [BR:
ppis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B1L02_20700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SNF2-rel_dom
TniB
Motif
Other DBs
NCBI-ProteinID:
ASD69313
UniProt:
A0AAD0W5G6
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All DBs
Position
2:complement(492648..494582)
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AA seq
644 aa
AA seq
DB search
MTQQQLLFQTLQSTFGHTTLRPGQSEVIESILQGQSAIAIFATGAGKSLCYQLPAIIKEG
MCLVVSPLLALMHEQRDYLQSKGIATACLDSTQTKEQTLRTENAVRDNALKVLFISVERL
NSQKARTLLSQSNISFLVIDEAHCISEWGHNFRPDYLKVAKYRHELRINQVLLLTATATN
KVARDMADKFEVSEQNIIRTGFYRKNLLLSAAHISESQKDEYLLAFLKRAKGAGIVYVTQ
QKQAEEVAKMITACGFPAEAFHASLQPEKKAQIQADFLAKANLIVVATIAFGMGVDKPDV
RWVLHYDMPKSIEGYSQEVGRAGRDGENAHCVALINNEKIATLENFIYANALERESLTLL
FNELFADLSTDYHLNEYDLAYKTNINQLVLKTLIVQLELQGYLQVNYSYFAELSIAFTQE
KDKILAKYSPERQLFLTRLFSCFEFKKKWGLLSHQTLKEHNIPLTKAQEVVEYLQSQQLI
EVKVAKYTSVYSKPTQHVNINELVQSFYQQSQIKEQGELARLRHLLKFFQLTSCYHKALA
SYFGDKLAPEQCGHCSVCSGKHLIVNVQENNELDVETTRNILRDVSQFAAQRGVTFTTHL
KTLFLLGLNCPYFTKYKFRQLSGFGSLSSEKYEKAKALITERAL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgactcaacaacagctactttttcaaacactacaaagcacatttggacatacaacactt
cgcccagggcaatctgaagtcatcgagtctatactgcaaggtcaaagtgcaatcgctatt
tttgcaactggtgcaggaaaatcgttgtgttaccagttacctgcaataatcaaggaaggc
atgtgcttagtcgtttcaccacttttggcactgatgcatgagcagcgagattacctacaa
agcaaaggaattgcgacagcctgtctcgatagtactcaaaccaaagagcagacgttacgc
acagagaatgcggtgcgggacaatgcacttaaagtcctttttatatcagtcgagcgtctg
aatagccaaaaagcacggactttattatcacaaagcaatatctcttttcttgtcatcgac
gaagcccattgtatttctgagtggggacataatttcagacctgattacctaaaagtagct
aaatatcgacatgaactcaggatcaatcaagttttgttactaactgcaacagcgacaaat
aaagtcgctcgagatatggcagataaattcgaagtctctgaacaaaatatcattaggact
ggtttttaccgaaagaaccttttgttaagtgcagcccatattagcgaatcacaaaaagac
gaatatttgctcgcctttttaaaaagggcgaagggcgcgggtatcgtttatgtaacacaa
caaaagcaagcagaagaagtggcaaaaatgataactgcctgtggctttccagcagaagct
tttcacgcatctttacagcccgagaaaaaggcacaaattcaagctgactttctagctaaa
gcaaatcttatcgttgtggctaccattgcatttgggatgggtgtagacaaacccgatgtc
cgttgggtactacattatgatatgccaaaatcgattgaaggatatagccaagaagtgggc
agggcggggagagatggtgagaatgcacattgcgtagcattaattaataatgaaaaaatt
gccacattagagaatttcatttatgccaatgcattagagcgtgagtcattaacgctgctg
tttaacgaactatttgctgatctaagtacagattatcaccttaatgaatacgatctcgct
tacaaaactaatattaatcaattggtactaaaaacgcttatcgtccagctcgaacttcaa
ggttatttacaggtaaactacagctactttgcagagctaagcatcgcattcacccaagaa
aaagataaaatattagcgaaatactcgcccgagcgacaactatttttgactcggctattc
tcgtgttttgaattcaaaaagaaatggggattgctttcacatcaaacattgaaggagcac
aatatcccactgacaaaagcgcaagaagtcgttgagtatttgcaaagccaacaattgatt
gaagtaaaagtcgctaaatatacgtcggtttattcaaagcctactcaacatgtaaacatt
aatgaattggttcagtctttctaccaacagtcacaaattaaagaacaaggtgaacttgca
cggctaagacatctacttaaatttttccaacttacttcatgctaccacaaagcgctcgcc
agttattttggcgacaagctcgcaccggagcaatgtggtcattgcagtgtctgcagtggt
aagcatctaatcgtcaatgtacaagagaacaacgaattagatgttgaaacaacacgaaat
atattaagagacgtttcacagtttgcagcgcaacgcggcgttacttttacaactcacctc
aaaacgttgtttttactgggcttaaattgcccctattttactaaatataaattcagacaa
cttagcgggtttggtagcttatccagcgaaaaatatgagaaggcaaaagcattgatcacg
gagcgcgctttataa
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