Pseudoalteromonas piscicida: B1L02_21095
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Entry
B1L02_21095 CDS
T04942
Name
(GenBank) exonuclease SbcD
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppis
Pseudoalteromonas piscicida
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppis03400
]
B1L02_21095
DNA repair and recombination proteins [BR:
ppis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B1L02_21095
Archaeal homologous recombinant proteins
B1L02_21095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
GAS
AAA_23
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
ASD69390
UniProt:
A0AAD0W572
LinkDB
All DBs
Position
2:588691..592350
Genome browser
AA seq
1219 aa
AA seq
DB search
MKLEKILITNLASIESAEVDFTAAPLKDTGLYAITGDTGAGKSTLLDAVCLAFFGKTARL
KSDDKEKVAFNGDNIKLNDPRNLLRRGCVAASASVVFIAQDSKRYQATWSVERARKSPKG
NLKTATIELFSLPDMTLVCEKKKETEQKIEQLVGLNFEQFTRAVLLAQHEFSAFLKAGGD
ERAQLLECLTGTEKFSNIGKAVYEAHKQKKIELQSQQDKLGQIVLLSPEQQAELEAQKLG
LLDTRNRQQETSTKLQAQLQWLADVELRKQKIAEVEHTLQTLEQQIEEGKPQQEYAQQVL
KANEMRDNREQHELAEKRVAQLSQDRLALQQQDFASAITTLKAKQQQLEQQLITQQADFV
KLEPSFNTIRILDEKLSLHKAQAIETQPYLDKHANLIAQHAAAIQKYQVQQGEIDTELQQ
LEHEQASLRSVSNIAAQWSVVQPQFDDLKKYQQQRNEHEVQLQKLPNEQQALGIQLSKHE
TEVQQLQKVYDTEASALSALKKALAPLTQQDLNLALQNWSLCVQAYRSIEEGDALLHQLR
SQQTQHHIGLERLEMLIRDTKQQDELSKQRLALTRDNLEQVQLRASERISDLRSQLRAGQ
ECMVCGSKEHPYGVEHIDVHWEQLLSDFRSQYQAAEQAREQVLQRYNQQVGEKERENALW
QSVSQEIAHCTKQINENRARLDALSDEYKVGSAEQAEMQLVSIQSRLNELSTLRNNIDRQ
WQSVQQAQQHLEQAKHKGQALQQQHHDLGNHIAFLRTEYDQLSQTVDALRCRLEALISDK
SWWQEFDSSPQTAISQLKMRVQTWLKTTERTDALAKDKVQLEHQLHLVSQQKQDEAQRLE
ELKHTLLQHQQNIEHLNRERAEYLPQQHTRLDDWITELKQQEQQSREQITQTQLALSQTE
AQREKAQHSLTQLEKQIAEQTSRLQQLDERFEQWLLDQQGQLDKVKVLALLEASLDEARA
DLEKCAQVQQAFQNTKLQLSHQRDELNQLEKKYPDGVDGEQVKQSHTETEQALEQTQNQL
LQVQSALEVDAQNKKQFSLQAANLAQLQQDYEQWHLLDKLLGDATGKKLRNWAQTQTLKI
LLQYANQQLHTLSRRYLLTNIEQSLEIAVIDKDMADEQRSVNTLSGGESFLVSLSLALGL
AALSSNKVQIHSLFIDEGFGTLDPETLGVAIDALDALQSQGRKVGVISHVAQMSERIATR
IHVNKQPGGYSSLNLVPQT
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgaaaaaatattaattaccaaccttgcctctatagaaagtgccgaagtcgac
tttactgcggcaccactcaaagacaccggtctctatgctattaccggcgatacaggggca
ggaaaaagcactttactggatgcagtttgccttgcattttttggcaaaaccgcacggtta
aaatcggacgacaaagagaaagtagcctttaatggcgataacattaagctaaacgatccg
cgaaacttgttgcgtcggggctgtgttgcggcatctgcgagcgtggtttttattgctcaa
gatagcaagcgttatcaagctacctggtcggtagagcgtgcgagaaagagccctaaaggt
aatttgaaaaccgctacaatagagttatttagtctacctgatatgacgctggtctgtgag
aagaaaaaagaaacagaacaaaaaatcgaacagctagtcgggcttaactttgaacagttt
actcgggccgtgttacttgctcagcatgagttctccgcatttttaaaagcaggcggagat
gagcgagcacagttactcgaatgtcttacgggcactgaaaagttcagtaatatcggcaag
gcggtttatgaagcgcacaagcaaaagaaaatcgagctgcaatctcagcaggataagcta
ggtcaaattgtgcttttgtcaccagagcagcaagccgaacttgaagcacaaaagttggga
ttgcttgatacaagaaatcgacaacaagagacaagcacaaagctgcaagctcagctgcaa
tggctcgcggatgtcgaactgagaaaacaaaaaatagctgaggtggaacacacgctgcaa
acgcttgagcagcaaatagaagagggaaaaccgcagcaggaatatgcgcagcaagtctta
aaagccaacgagatgcgtgataaccgtgagcagcatgaactggctgaaaaacgcgttgcg
cagctatctcaagatcgactagcactgcagcaacaagattttgcatccgccattacaacg
ctaaaagcaaaacagcagcaactggaacagcagctcattacgcagcaagctgattttgta
aagttagagccaagctttaacaccattcgtatattggatgaaaagctgagcctacacaaa
gcacaagcaatcgaaactcagccttatctcgataaacacgcgaacctaattgcacaacat
gcggctgcgatacagaagtaccaagtgcaacaaggtgaaatagatactgagttacagcag
ctggagcatgagcaagcgagcttgcgctcagttagcaatattgccgcccaatggagcgtg
gttcagcctcaattcgatgatctgaaaaagtaccaacaacaacgcaatgagcatgaagtc
cagttgcaaaaattaccgaacgaacagcaagcgctaggtatacaactgagcaaacatgag
actgaggtacagcaactacaaaaggtatacgacaccgaagccagcgcgctctcagcgtta
aaaaaagcactagcacctttgactcaacaagacctaaatttggcattgcagaactggtct
ctatgcgtgcaagcctaccgtagcatcgaagaaggtgatgccttgcttcatcagttacga
tcgcaacaaacgcaacatcatattggcttggaaagacttgagatgctgatccgcgatacc
aaacagcaagacgagttgtctaagcagcgcctagccctaactcgtgataatttggagcaa
gtgcagttacgcgcaagtgagcggatcagcgatttacgctctcaactgcgggcagggcaa
gaatgcatggtgtgtggctcaaaagaacatccttatggtgtggagcacatcgatgtccac
tgggaacagctactatcggattttcggtctcagtatcaagctgctgagcaagctcgtgaa
caagtgttgcagcgttataatcaacaagtcggtgaaaaagagcgtgaaaatgcactatgg
cagtccgtcagtcaggagattgctcactgtactaagcaaataaatgagaatcgtgctcga
ctagatgcgttgagtgatgagtataaagttggcagcgccgagcaagctgaaatgcaactc
gtgagtattcagtcacggctaaatgaattatcaacgttacgcaataatattgaccgtcag
tggcaatcggttcagcaagcacagcaacatcttgagcaggctaaacataaaggacaggca
cttcagcagcagcaccatgatttaggtaatcatattgcctttttgcgaaccgaatatgat
cagctatcacaaacagtggatgccttacgctgtcgacttgaagcgttaatttccgacaaa
tcgtggtggcaagaatttgattcatctcctcaaactgccataagccaacttaaaatgcga
gtgcaaacttggttaaaaaccaccgagcgtaccgatgcgttagcgaaggataaagttcag
cttgagcatcaattacatcttgtcagtcaacaaaaacaagatgaggcgcaacggcttgaa
gaattaaaacatacgcttttacaacaccaacagaatattgaacacctcaatcgcgaacgc
gccgaatacttaccacagcagcataccagattagatgattggattactgagcttaagcag
caagagcaacaaagccgagagcagatcacacaaacccagctggcgctgagccaaaccgaa
gcacagcgtgaaaaagcacagcacagcctgacgcagttagaaaagcaaattgccgagcaa
acatcgcgtttgcaacaactagacgaacgctttgaacaatggttgctcgaccagcaaggt
cagttagacaaggtaaaagtattagcgctacttgaggcttcgctggatgaagctcgagcg
gatctagagaagtgtgcgcaagttcaacaagcgtttcaaaacacaaagctacagctgagt
catcagcgtgatgagcttaaccaacttgaaaaaaagtatcctgatggggtcgatggtgag
caagttaagcaaagtcataccgaaaccgagcaagcacttgagcaaactcaaaatcaattg
ctacaagtacaaagcgcattagaggtagatgctcagaataaaaaacagttctctttgcaa
gcggcaaacctcgctcagctgcaacaagactacgagcaatggcatttgctagataagctg
ttaggtgatgcaacaggcaagaagctgcgtaattgggcgcaaacgcaaacgttaaaaatc
ttattgcagtatgctaatcagcaattgcatacgctttctagacgctatctgcttactaat
attgagcagtctttagaaattgcggtcatagataaagacatggcggacgaacaacgcagc
gtcaacaccttatctggaggggagtccttcttagtatcattatctttagcgcttggactt
gccgcgctttcatcaaataaagtgcaaatacattcattattcattgatgaaggctttggt
acgttagaccccgagacgctgggtgtcgcgattgatgctttggacgcgttgcaatcacaa
ggccgcaaggttggagttatctcacatgtcgctcagatgagcgagcggatcgccacccgt
atccatgtgaataaacagccgggaggctactcatctttaaatttagtaccacaaacatga
DBGET
integrated database retrieval system
