Pseudomonas plecoglossicida: RK21_00002
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Entry
RK21_00002 CDS
T03646
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RK21_00002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_00002
Enzymes [BR:
ppj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RK21_00002
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RK21_00002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AJG11510
LinkDB
All DBs
Position
804..4253
Genome browser
AA seq
1149 aa
AA seq
DB search
MIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPQDDDQGGCG
IAAAIDVQLPGSFMWQLYRSVLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRR
FLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWAAGEHVLNTARAERKALPPGNRWQ
AELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPARVIVFGISSLPAQALEA
LAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQSLHQHAHP
LLAAWGKQGRDYINLLDSYDDPSSYQGVFSDGRIDLFSEGSPTTLLNQLQDDILELRPLA
ETREQWHPVDPAKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPAIDT
YAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLD
VPAVRARFGIRENDLPTLHRWIEGAGIRWGLNAEQRASLGLPAGLEQNSWRFGLRRMLLG
YAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVASKALSEPATVSQWGERLHALL
QVFFLAEGERDEFLLMQLQDLRDSWLEVCEAVGLQDPLPLTVVREAWLSGLDQGKLSQRF
LAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRY
LLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLAAGWQLAGAEQGQPAEPGE
QLLHALTQEHPLQPFSSRYFQKGSPLFSFAHEWQVLHQQGQEDQQADPVLPPYHDEEALS
LTQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDILQRYGASESLLGAALAEPD
NAEQALQAQARRLQACGVLPLAGFGELLQRELIEPLPGLLQRHRQLLQRWPQLVEGALPV
HFEHGPHRLEGWLGRVFQADDQSLLSITTVPNTISAGRNALKWHRLIAPWVTHLAACAAG
YPYNSALVASDLTLLLEPLPQAQAAQLLGDLLVARQAAMNAPLPVAAKTAFAWLAQDDSD
KALAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCEALYRPLFNAPWQ
TLGNPEKGA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtccacggcaaccgcctcgacgacctgcgcagcttggtggtgagctggatgcgt
cgctatcccttggcacctctggaaaacgaaatcgccttggtgcaaagcaatggcatcgcc
caatggctcaagctggctcttgccgaagaccctcaggacgatgaccagggcggctgtggc
atcgccgccgccatcgatgtgcaactgccaggcagcttcatgtggcagctttaccgcagc
gtgctgggccgtgacgaaattcccgaagtctccctgctcgacaaggcaccgctgacctgg
cgtctgatgcgtctgctcccggctttgatcgaacgtcctcacttcgaaccgctgcgacgc
ttcctcaccgacgacagcgacctgcgcaagcgctatcagctcgccgagcgcctggccgac
ctgttcgaccagtatcaggtctaccgcgccgactggctcaaggattgggccgctggcgag
cacgtcctcaacaccgcccgcgctgaacgcaaggcgctgcccccgggcaaccgctggcag
gccgagttgtggcgtgcattgctggaggatgttggtgagcagggcatggcgcagagccgt
gccggcgtacatcaacgcttcatcgaacggatcaatagcctggagcaggcacctgccggt
ctgccggcccgggtgatcgtattcggtatctcatcgctgccagcccaggccctcgaggca
ctggccggcctggcacgcttcagccaggtgctactgtgcgtgcacaacccctgccgccac
cactgggccgatatcgttgccgacaaggacctgctgcgccaccagtacaagcgccagcag
cgcaagcagggcatgcccttgcaactggacgaccagtcgctgcaccagcatgcccaccct
ttgctggccgcctggggcaaacaaggccgcgattacatcaacctgctcgacagctacgat
gaccccagcagttaccagggcgtgttcagcgacggtcgcatcgacctattcagtgagggc
tcgcccaccacgctgctcaaccagttgcaggacgacatccttgaactgcgtccgctcgcc
gaaactcgtgagcagtggcatccagtcgacccagcgaaggaccgctcgatccgcttccac
atcgcccatagcccgcaacgcgaagtggagatccttcacgatcagttactggcccggttc
agcgcagacccaaccctgcgcccacgtgacgtgatcgtcatgctgccggccatcgatacc
tacgcgccgcatattcgcgccgtattcggccagttgcagcgcaacgatccgcgctacatc
ccgttcaccctgaccgaccagggccaacgtggccgcgaacccttgctgattgccctcgaa
cacctgctcaagctgccggacagccgcttcgcggtcagcgaagtgctcgacctgctggat
gtgccggcagtccgcgcccgtttcggcatacgcgaaaacgacctgcccacgctgcaccgc
tggatcgagggggccggcatccgctggggcctcaatgccgagcagcgggccagcctgggc
ttgcccgctgggctggaacagaacagctggcggttcggcctgcggcgcatgctgctgggt
tatgccgtcggcgtgggtgaggcctgtgacggcatcgaaccctacgatgaaatcggtggc
ctggatgcggcgctgatcggcccgctggtcgccttgctcgacgccctcgaagtagccagc
aaggccttgtccgagcctgccactgtcagccagtggggggaacgcctgcatgccttgctg
caagtgtttttcctggccgagggcgagcgcgacgagttcctgctgatgcagttgcaggat
ttgcgtgatagctggcttgaggtgtgcgaggccgtcggcctgcaagacccattgccgctg
accgtggtgcgcgaagcctggctgtcgggcctcgaccagggcaagttgtcccagcgcttc
ctcgccggctcggtgaacttctgtaccctcatgccgatgcgcgccatcccgttccgggtg
gtctgcctgctgggcatgaacgatggcgattacccccgcgctcagcagccgctggacttc
gacctgatggccagcgactaccgccccggtgaccgctcgcgccgcgaggatgaccgctac
ctgctgctcgaagcattgttgtcggcccgcgaccagctgtatgtcagctgggtcgggcgc
agcattcgcgacaacagcgaacgcccggcctcggtgctcatcggccagttgcgcgatcac
cttgcagccggctggcagctggcaggcgcggagcaggggcagccggcagaaccgggcgag
caactgctgcacgcactgacccaggagcacccgctgcaaccgttcagttcacgctacttc
cagaagggcagcccgctgttcagctttgcccacgaatggcaggtgttgcaccagcagggc
caggaggaccagcaggctgaccccgtcctgccgccataccatgacgaggaggccttgagc
ctgacccagctgaatgacttcctgcgccacccggtgcggcatttcttcagccagcgtctg
aaggtgtacttcgaagcgctggaagcaccgaccccggacgaggaacccttcgtcctcgat
atcctgcaacgatacggcgccagtgaaagcctgttgggtgcagcgctggccgagccggac
aatgccgaacaggccctgcaggcacaagcacggcgcttgcaggcctgtggcgtgctgcca
ctggccggcttcggcgaactgctgcagcgcgagctgatcgagccccttccaggcctgctg
caacgccaccgccagctattgcaacgctggccgcagctggtcgagggggcattgccagtg
catttcgagcacggcccgcaccgcctcgaagggtggcttgggcgggtattccaggcagat
gaccagagcctgctcagcatcaccaccgtacccaacactatcagtgccgggcgtaacgcc
ctcaagtggcaccgactgatcgcgccctgggtcacgcacctggcggcctgcgcggcgggc
tacccgtataacagcgcgctggtggccagcgacttgaccctactgcttgagccactgccg
caagcgcaggcggcgcaattgctgggcgacctgctggtagcccgtcaggcggcgatgaat
gcgccgttgccggtcgcggccaagaccgcgttcgcctggctggcccaggacgatagcgac
aaagccctggctgctgccgcccgcgcctacgaaggcgatgagcgcaccagcttcggcgag
cgcagtgaaagcatcgccctggcccggcagttccgcgactttgccgcactcaccgctgat
gaaaccttcgaaggctggtgcgaagccttgtaccgcccattgttcaacgccccgtggcag
accctgggcaacccggagaaaggcgcatga
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