Pseudomonas plecoglossicida: RK21_00003
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Entry
RK21_00003 CDS
T03646
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RK21_00003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_00003
Enzymes [BR:
ppj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RK21_00003
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RK21_00003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AJG11511
UniProt:
A0A099N5Y6
LinkDB
All DBs
Position
4250..7927
Genome browser
AA seq
1225 aa
AA seq
DB search
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFNRELLPPQILVV
TFTDAATKELRERIRARLAEAARFFRGELEAADPLLHQLRDDYPEETWPRCAGRLEIAVQ
WMDEAAVSTIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDA
LAWVRGHWGSPDALLPRIRPLFGRVRVQHDGPEPAALIQASLQQRGEQLARLKAPWAQWA
EELRQICRDALAAKQVDGRKMQARYFEPWFDKLCAWAANEQLVELDLGTGFTRLTPAGMA
EAWKGEPPEHPALNAMQSLQQQLQALDSPDAPLLEHAANWVAARFEVEKRRRAEMGFDDM
LLRLQHALASEAGDRLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFM
IGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAG
RGAFLFREADDNPLPFIEVRAKGRSEQLLIDGEACAALQCWHLESEEPVSGSVYRQQLAA
SCASHIVALLNGGQQGTAGFQNAEGELRPCLPSDIAILVRDGHEAQMVRAELAAREVRSV
YLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLDLSLAALDRLNQDERVWE
DWVMRFRRYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAG
ELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYMPFICT
NKPVDGTRLPLAWHDSQGNAHLTLTPDQEQIDRADDERLAEDLRLLYVALTRAQHACWLG
VADLKRGNQKSSQLHRSAFGYLLGGGLALPGSQQLTDWLQALAKTCPHISCPSLPPADEQ
VYRMPHAEHELLPARKPRRAVGAEHWWIASYSALRVGDQTLGADSSQAQQLLDDEVVDTQ
MLREVPADSGDIHRFPRGPNPGTFLHGLLEWVGREGFSQVSGNARLIERTVGQRCNRRDW
TGWIPTLTHWLQRLLGEALPLPGNHLGVTLGQLRHYQIEMEFWFASHQVDAEQLDRLVAR
HTHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGPDIQAYDAQAMEKSI
LEHRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRGASSSGHGVYHAKPPREL
IESLDALFRGEHPPVQQDLFAGAVI
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaccgtcccctggcactgagtttccccctgcacggcagccagctgatcgag
gcaagcgccggcacgggcaagaccttcaccatttcggcgctgtacctgcgtctgatcctc
ggtcacggtggcgagcagggcttcaaccgcgagctgctaccaccgcagatcctcgtggtg
accttcaccgacgccgccaccaaagagctgcgcgaacgtatccgcgcccgcctggccgaa
gctgcgcggttcttccgtggcgagctggaggcggccgacccgctgctgcatcagctgcgt
gacgattacccggaagaaacctggccacgctgtgccgggcgcctggaaatcgccgtgcag
tggatggacgaggcagcggtatcgaccatccatggctggtgccagcgcatgctgcgcgaa
catgccttcgacagcggcagcctgttcacccagaccctggaaacagaccacagcgaactg
ctgggtcaggtcatgcgcgactactggcggcgcttctgctacggcatgcaaggcgacgcg
ctggcctgggtgcgtggccactggggcagccccgacgccttgctgccgcggatccgcccg
ctgttcggtcgcgtgcgcgtccagcacgatgggcccgagccggcggcactgatccaggca
tcgctgcagcaacgtggcgagcagttggcccggctcaaggcgccttgggcgcaatgggcc
gaggagttgcgccagatctgccgtgatgcactggccgccaaacaggtcgatggccgcaag
atgcaggcccgttacttcgagccctggttcgacaaactctgcgcctgggccgcaaacgaa
caactggtggaacttgacctgggcaccggctttacccgcctgaccccagcgggcatggcc
gaagcctggaagggcgagccacccgagcacccggccctcaacgccatgcagagtttgcag
caacagttacaggccctggacagcccggatgccccattgctcgagcatgccgccaactgg
gtagcggcacgcttcgaagtggagaagcgtcggcgcgcggaaatgggcttcgacgacatg
ctcctgcgcctgcagcacgccctggccagcgaggctggcgatcgcttggccagcctgatc
cgcgaacagttcccggtggcgttgatcgacgagttccaggacaccgacccggtgcagtac
ggcatcttcgagcgcatctaccagatcagcgaaaaccgcgccgaaaccggcctgttcatg
atcggcgaccccaagcaggcgatctatgccttccgtggcgccgacatctacacctacctt
gctgcccgccgtgccaccagtggtcgcctgcacagcctggacaccaactaccgctccagc
aaggccatggtcgcggcggtcaaccaggtgttcctgcaggccgaggcgcgtgaggcaggg
cgtggcgcattcctgttccgcgaggctgatgacaacccgctgccgttcatcgaggtccgc
gccaaaggccgtagcgaacagctgttgatcgacggtgaagcctgcgcagccctgcaatgc
tggcatctggaaagcgaagagccggtctccggcagcgtttaccggcagcagctggcagcc
agttgcgccagccatatcgtcgccttgctcaatggcggccagcaaggcacggctggtttc
cagaatgccgagggcgaactacgcccgtgcctgccatcggacatcgccatcctggtgcgc
gatggccatgaggcgcagatggtccgcgccgagcttgccgcgcgcgaggtgcgtagtgtg
tacctgtccgacaaggactcggtattcgccgcccaggaagcccacgacctgttggcctgg
ctaaaggcctgtgccgaacccgactcggagcgcctgctcaaggccgccctggccagcctt
accctcgatctgtcgctggctgcgctggaccgcctgaaccaggacgagcgggtctgggaa
gactgggtcatgcgttttcgccgttaccgcgacacctggcagcgtcagggcgtgttgccg
atgctgcggcacctgctgcatgacttccagctgccgcgcacgctgatccgccgcagcgat
ggcgagcgggtgctgaccaacctgctgcacctggccgagctgctgcaacaggccgccggc
gaactggacggcgaacaggcgctgatccgccacctggccgagcacctggccagttccggc
caggctggtgaagagcagatcctgcgcctggagagtgacgagcagttggtgaaagtggtg
accatccacaaatccaagggcctggaataccccttggtctacatgccgttcatctgcacc
aacaaaccagtggacggcacccgcctgccgctggcctggcatgatagccagggcaacgcc
catctcaccctcacaccagaccaggaacagatcgaccgcgccgacgacgagcgcctggcc
gaagacctgcgcctgctctacgtggccctgacccgtgcccagcatgcctgctggctgggt
gtcgccgacctcaagcggggcaaccagaagagctcgcaactgcaccgctcggcgttcggc
tacctgctgggtggcggcctcgccctgccgggctcgcaacaactgacggactggttgcag
gccttggccaagacctgcccgcacatctcttgcccgagcctgccgccggcagatgagcag
gtgtatcgcatgccgcacgccgagcatgagctgctacctgcccgcaagccgcgccgcgcg
gtgggcgccgagcattggtggattgcctcgtacagtgccctgcgcgtcggcgaccagacc
ctcggtgccgacagctcccaggcccagcagttactggatgatgaagtggtcgatacccag
atgctgcgcgaggtcccggccgacagtggcgatattcaccgcttcccgcgcgggcccaac
cccggcaccttcctgcatggcttgctggaatgggttggccgcgagggtttcagccaggtc
agcggcaatgcacggctgatcgagcgaaccgttggccagcgctgcaaccgtcgcgactgg
accggctggattcccaccctgacgcactggctgcagcgcctgctgggcgaagcgctgccg
ttgccgggcaaccacctcggtgtaacgctcgggcagctgcgccactaccagatcgaaatg
gagttctggttcgccagccaccaggtcgatgccgaacaactcgaccgcctggtggcacgc
cacacccaccccggcctggcacgcccggcggcgcagccgactgtgctcaatggcatgttc
aaaggtttcatcgacctggccttcgagctggacgggcgttactacgtgaccgactacaag
tccaactggctggggccggacattcaggcctacgatgcccaggccatggaaaagtccatc
ctcgaacatcgctacgacctgcagtacgtgctgtacctgctggccctgcatcgccagttg
cgcgcccgcctgcctgactacgactacgaccgccatgttggcggcgccctgttcatcttc
ctgcgaggtgccagcagcagcggccacggcgtttaccacgccaagccaccgcgtgagctg
atcgaaagcctcgatgcgctgttccgtggtgagcatccgcccgtacagcaggacctgttt
gccggagccgtgatatga
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