Pseudomonas plecoglossicida: RK21_00602
Help
Entry
RK21_00602 CDS
T03646
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppj
Pseudomonas plecoglossicida
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppj03019
]
RK21_00602
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RK21_00602
Messenger RNA biogenesis [BR:
ppj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RK21_00602
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
AAA_25
T2SSE
nSTAND_NTPase5
ResIII
ABC_tran
AAA_30
NACHT
SRP54
Motif
Other DBs
NCBI-ProteinID:
AJG12110
LinkDB
All DBs
Position
663820..667725
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDANTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTFPVETWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAHHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKDPSDYPKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVARIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSLQVGELRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVPDEAWD
ESVNLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKSEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEEGGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKYLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPRDGAALAGLAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGAWFKELPRYLEAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgcctgcgccggcaattgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggaaaaggtccaggcgtcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgaccgtgcgctacgacgacagcctgccaatcgctgccaagcgtgacgaaatcaag
aaggccctggccgagcaccaggtgctggttatcgccggcgaaaccggctcgggcaagacc
acccagttgccgaagatctgtctcgaactgggccgtggcagccatggcctgatcgcccac
acccagccacgccggatcgccgcccgcagcgttgccgcgcgggtcgccgaagaactgggc
acgccgctgggcgggctggtcggctaccaggtgcgtttcgaagaccagagcgacgccaac
accctggtcaagctgatgaccgacggcatcctgctggccgaaacccaacacgaccgtttc
ctcgagcgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctcaacatcgac
ttcctgctcggctacctgaagaccctgctgcaccggcgcccggacctgaagctgatcatc
acctcggcgaccatcgacctggagcgcttctccaaacacttcgacggcgcgccgatcatc
gaggtgtccgggcgtactttcccggtggaaacctggtaccgcccgctaaccagcgagcag
gacgaggagggcaaccagatcgaggacgacctcaccgtcgaccaggccatcctcgccacg
ctggacgagttggcgcaccacgagcggagtgagggcaagggccccggcgatgtgctgatc
ttcctgccgggcgagcgcgagatccgtgatgccgccgagatcttgcgcaaggcgcaactg
cgccacaccgagatcctgccgttgtacgcgcgcctgtcgccggccgagcagcagcgcatc
ttccagccacacaccgggcgccgtgtggtgctagccaccaacgttgcggaaacctcgctg
accgtgccgggcatccgctacgtgatcgataccggtaccgcacgcatcagccgctacagc
taccgcgccaaggtgcagcgcctgcccatcgaggccgtgtcgcaggccagtgccaaccag
cgcaagggccgctgcggccgggtcgagccgggtatctgcgtgcgcctgtacagcgaagag
gatttcaacagccggccggcgttcaccgacccggagatcctgcgcaccaacctggcggca
gtgatcctgcagatgctgcacctgcgcctgggcgcaatcgacgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgatggtttcaacctgctgcaggagctgtcggcggtc
aaccgcgaaaaccagctgacgccgatcggtcgccaactggcgcgcctgccgatcgacccg
cggctggggcgcatgctgctcgaaggcgcccgcctgggcagcctgcaggaagtgctgatc
gtcaccagtgcgctgtcggtgcaagacccgcgcgaacgcccgccggagcgccagcaggcc
gccgaccaggcgcacgcgcaatggaaggacgtggattccgacttcgccgcgctggtcaac
ctgtggcgtggcttcgaggaacagcgccaggcgttgaccgccaacccgctgcgcaactgg
tgccgcaagaacttcctgaactacctgcgcctgcgcgaatggcgcgatgcccatcgccag
ctggcactgatctgccgtgacctgcagctgacagtgaacaaggacccgtccgactacccg
aaaatgcacaaggccattctcagtggcctgctcagccagatcggccagaagaccgaagag
ggcgactaccagggcgcccgccagcggcgcttctgggtgcacccgtcgtcgggcctgggg
cgcaagcgcccacagtgggtgatggcggccgaactggtcgaaaccaccaagctgtacgca
cgcatggtggccaggatcgagccggactggatcgagccgctggccggccacctggtcaag
aagaaccacttcgaaccgcattgggagaagaagcgcgggcaggtcgtggcctacgagcag
atcactctgtacgggctgatcctggtcggccgtcggccggtgcatttcggcccgatcgac
ccggtcacctcgcgcgagctgttcatccgcgaaggcctggtgggtggcgaaatccagtcg
cgggccaagtgcctggcggccaataagcgcttgctggaagagctcgacgagctggaggcc
aaggcccgtcgccgtgacatcctggccgacgaagagacgctatatgccttctacgaagcg
cgtctgccggcggaaatccaccagacggcgaccttcgacagctggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaagacgtgctggcccgcgaggccagc
gaagtcaccgccgcgcagtaccccgacagcctgcaggtgggcgagcttcgcctgccgctg
agttaccacttcgagcccgggcacccccgcgatggcgtgaccgtgcgggtaccggcgccg
ctgctgccgagcttgccgggcgagcgcctggaatggcttgtgcccggcctgctggaagcc
aagtgcgtggcgctggtgcgcaacctgcccaaggcgctgcgcaagaactttgtgccggtg
ccggacttcgtcaaggcctcgctggcgcgcatgaccttcggccagggcgcattgccgcag
gccctgggccaggaactgctgcgcatgaccggcgcccgtgtgcccgacgaggcatgggac
gagtcggtcaacctggtcgaaggccacctgcgcatgaacatcgaagtggtcgatggccag
ggcaagtttctgggtgaaggtcgcgacctggccgagctgaccgcgcgctttgcagcagcc
agccaggcagcgttggccgtgccgcgtgacgccaagagcgagcagccggtgcaggccaag
gctttcagcgaggtgaagcagaccgcgcagcagaagatcgccggcctgtcgatgactgtg
tacccggcactggtggaagagggcggcaccgtgcgcgaagggcgcttctcgacccaggcc
gaggccgaattccagcaccgccgcgccttgcagcgcctgttgctgcagcagctggccgag
ccggccaagtacctgcgcggcaagctgccggggctgaccgagctgggcctgctgtaccgt
gaaatgggccgggtcgaggcgctggtcgaggacattttgctggccagcctggacagctgc
atccttgaaggcgaacagccgctgccacgcgatggtgcggccctggctggcctggccgag
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcacggcagaccctggaagtg
ctgaagctgtggcatggactgcagaagcgcttcaagggcaagatcgacctgagccaggca
gtggcgcttaacgacatcaagcaacagctcggcaacctggtgtacccaggcttcgtgcgt
gaaacccccggggcctggttcaaggagctgccgcgttacctagaggcggtggaactgcgc
ctggagaagctggggtcgcaggtgcagaaggaccgggtttggagcggtgagctggccaac
ctgtgggcgcagtacaaggcacgtgccgacaagcatgcccaggaaggcaagcgtgatgag
caactgacggtgtaccgctggtggctggaggaatatcgggtttcgctgtttgcccagcaa
ttggggaccaaggtgccgatttccgacaagcgattgagcaagcaatggagccaggtggag
ggctaa
DBGET
integrated database retrieval system
