Pseudomonas plecoglossicida: RK21_01319
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Entry
RK21_01319 CDS
T03646
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppj
Pseudomonas plecoglossicida
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppj03032
]
RK21_01319
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_01319
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RK21_01319
DNA replication proteins [BR:
ppj03032
]
Prokaryotic type
DNA Topoisomerases
RK21_01319
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RK21_01319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Metal_resist
Motif
Other DBs
NCBI-ProteinID:
AJG12827
UniProt:
A0A099N173
LinkDB
All DBs
Position
complement(1427930..1428952)
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AA seq
340 aa
AA seq
DB search
MLDCPLPRTLHYVDDSQPGLTRRRWRGRFIYLDADGQRVRDSDTLARIAALAIPPAYTEV
WICADPQGHLQATGRDARGRKQYRYHAQWREIRDQHKYGRMLAFAQALPKLRAQLHDHLA
RPGLDREKVMALVISLLDHTLIRIGNQRYLRDNQSYGLTTLRNRHVEVKGSSIRFQFRGK
RGVEHNVSLNDRRLANLLKRCMELPGQALFQYLDDDGQRHSVGSSEVNQFLQQLTGADFT
AKDYRTWAGSSLALDLLRPLAWEPESEAKRQVAAIVRQVASRLGNTPAVCRRCYIHPAVL
EHYALGRLANLPKNRVRKGLDREEVALLLFLQALEEQDDH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcttgactgccccctgccgcgcaccctgcactacgtcgacgacagccagccgggcctt
acccggaggcgctggagagggcgcttcatctacctggatgccgacggccaacgagtgcgc
gacagcgatacccttgcccgcatcgctgcactggcaatccccccggcctataccgaggtg
tggatctgcgccgacccgcaaggccacctgcaagccacaggtcgcgatgcccgtggccgc
aagcaataccgctaccacgcgcagtggcgcgaaatacgcgaccagcacaagtacgggcgc
atgctggcgtttgcccaggccctgccgaaattgcgcgcacagctgcacgaccaccttgcc
cggccaggcctggaccgggaaaaggtgatggcgctggtgatcagcctgctggaccacacc
ctgatccgcatcggcaaccagcgctacctgcgtgacaaccagtcctatggactgaccacc
ctgcgcaaccgccatgtcgaggtgaagggcagcagcatccgcttccagttccgcggcaag
cgcggcgtcgagcacaacgtcagcctcaacgatcggcgcctggccaacttgctcaagcgc
tgcatggagctgcccggccaagcgttgttccagtacctggacgacgacggccagcgccat
agcgtcggctccagcgaggtcaaccagtttctgcagcagctgaccggtgccgacttcacc
gccaaggactaccgcacctgggccggtagcagcctcgccctggacctgctgaggcccttg
gcctgggagcccgagagcgaagccaagcgccaggtcgccgccatcgtccgccaggtagca
tcacgcctgggcaatacaccggcagtgtgcaggcgctgctacattcacccggctgtactt
gaacactatgccctggggcgcctggccaacttgccgaagaaccgtgtgcgcaaaggcctg
gaccgtgaagaagtagccttgctgttatttcttcaggcactcgaggaacaggatgaccat
taa
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