Pseudomonas plecoglossicida: RK21_01572
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Entry
RK21_01572 CDS
T03646
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RK21_01572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppj03021
]
RK21_01572
Transcription machinery [BR:
ppj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RK21_01572
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
Motif
Other DBs
NCBI-ProteinID:
AJG13080
LinkDB
All DBs
Position
1684669..1685178
Genome browser
AA seq
169 aa
AA seq
DB search
MIDAAPPPEHSLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIRE
PRAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDG
LKAPVRKAFLWSQLEGLGYAEIGKRLGVCERSVKRYMAQAYEHCLLAEL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacgccgcgccgccaccggagcatagcctgcctgccctgtaccgggaacaccgc
ggctggctggaaacctggctgcggcggcgcatgggcaatgcctgggatgccgccgacctc
agccaggataccttcctgcgtatcctggccagcgcccagccgctggcagacattcgcgaa
ccgcgtgcctacctgctgaccgtgggcaagcgcctgctgagcaacttccaccagcggcgc
agcctggaacaagcctacctcgatgcactggcgcagttgcccgagcagcatgtgccctcg
ccagagcagcgttgggtactgctggaaaccctgcaagccctcgacgagttgctcgacggc
ctcaaggcgccggtacgcaaggcctttctctggagccagctggagggcctgggctatgcc
gagatcggcaagcgcctgggcgtttgcgagcgctcggtcaaacgctacatggcgcaggcc
tacgagcattgcctgctggccgaactgtaa
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