Pseudomonas plecoglossicida: RK21_02405
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Entry
RK21_02405 CDS
T03646
Name
(GenBank) DEAD/DEAH box helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RK21_02405
09124 Replication and repair
03420 Nucleotide excision repair
RK21_02405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppj03021
]
RK21_02405
03036 Chromosome and associated proteins [BR:
ppj03036
]
RK21_02405
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_02405
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
RK21_02405
Transcription machinery [BR:
ppj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
RK21_02405
Chromosome and associated proteins [BR:
ppj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
RK21_02405
DNA repair and recombination proteins [BR:
ppj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
RK21_02405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
CnrY
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AJG13913
UniProt:
A0A0B5K0M0
LinkDB
All DBs
Position
complement(2518830..2521091)
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHRRVVARRAAGYESEITLEGQFET
LKVRGRADGYDPTCNRLEEIKTHRGDLSRQPANHRQLHWAQAKVYGWLMCQARQLPGIEV
ALVYLDVDSDGQTLISEHCTAAELQAFFETQCQRFLAWAQEQEQRLAERNQGLQALGFPY
PAFRQGQRQLAETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAK
TPGRALALDAMRQITHATPQPALRTLELIARDKACEHPDKACHGESCPLAAGFYDRLPAA
RAAAAALPMLDRAQLREVALAHQVCPYYLGQEMARWVDVLVADYNYYFDAHALLFGLTQA
NQWRVAVLVDEAHNLVERGRGMYSASLDQGQLQALRQSKPPGLVSALDRLNRQWNALYKE
QRAPYQASESLPDALLRALQQCIGLIQEQMNQTPAQMDPQVLQFFYQALQFSRVAELFDE
HFLFDISQRQGPRKRRLATLCLRNVTPARLLGPRMQAARSVTLFSATLSPRRFYSDLLGM
PADTAWLEVAAPFRAEQLEVRIASQVSTRYQQRQASLAPIVELIARQYERMPGNYLAFFS
SFEYLQQVAGLLAERHAQIPMWVQEPGMDEAARQGFLDRFVADGRGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDRGVLVLIDERFAEPRVQQMFPGWWPAPGG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttgagctatagcgtggcggtacgggccttgtgcgagttcagcgccaaggtaggcgacctg
gacctgcgcttcaccccatcacccaccgctcaggaggggatcgaagggcatcggcgcgtg
gtggcgcgacgcgccgcgggctacgagtcggaaattaccctcgaaggccagttcgaaacc
ctgaaagtgcgtggccgcgccgacggttacgaccccacctgcaaccgcctggaagagatc
aagacccaccgtggcgacctgtcgcgccagccggccaaccatcgccagttgcactgggcg
caggccaaggtctatggctggttgatgtgccaggctcggcaactgccgggcatcgaggtg
gcgctggtgtacctggacgtggacagcgatggccagacgctgatcagtgaacactgcacg
gcagccgaactgcaggccttcttcgaaacccagtgccaacgctttctggcttgggcacaa
gagcaggagcagcgcctggccgagcgtaaccagggcctgcaagcgctgggcttcccctat
ccggcgttccgccagggccagcgacaactggcggaaaccctgtacaaggccgtgagtacc
ggccgttgcctgatggcccaggccagtaccggaattggcaagaccctcggtaccttgttc
cccctgctcaaggccatggtgccgcagcaactggacaagctgttctttctcaccgccaag
accccgggccgggccctggccctggatgccatgcgccagatcacccatgccacgccgcag
ccggccttgcgcacgctggagctgatcgcccgcgacaaagcctgcgagcaccccgacaag
gcctgccatggcgaatcctgccccttggccgcaggcttctacgaccgcctgccggccgcg
cgcgctgcggcggcagcgttgcccatgcttgaccgcgcccagctgcgcgaagtggcattg
gcgcaccaggtatgcccgtattacctgggccaggagatggcgcgctgggtagacgtgctg
gtggctgattacaactactacttcgatgcccatgccttgttgttcggcctgacccaggcc
aaccagtggcgggtcgcggtgctggtggatgaggcgcacaacctggtcgagcgcggccgc
ggcatgtacagcgccagcctcgaccaggggcagttgcaggccctgcgccagagcaaaccg
cctgggctggttagtgcgctggaccggctgaaccggcagtggaacgccctctacaaggag
cagcgcgcgccgtaccaggccagcgagtcgctgccagatgctttgctgcgtgccctgcag
caatgcatcgggctgatccaggaacaaatgaaccagacgcctgcgcaaatggacccgcag
gtgctgcagttcttctaccaggcgttgcagttcagccgggttgcagagcttttcgacgag
cacttcctgttcgacatcagccagcgccaagggccacgcaagcggcggctggccaccctg
tgcctgcgcaatgtcaccccggcgcgcctgttgggcccacgcatgcaggcggcgcgcagc
gtgacgctgttctctgcaaccctgagtccacggcgtttctacagcgacctgctgggcatg
ccggccgataccgcctggctggaagtggccgcgccgtttcgcgccgaacagctggaagtg
cgcatcgccagccaggtatccacccgctaccagcaacgccaggcttcgttggcgccgatc
gtcgagctgattgcccggcagtacgagcggatgccgggtaattacctggcgttcttcagc
agtttcgagtacctgcaacaggtggccgggctgctggccgagcgacatgcgcagataccc
atgtgggttcaggaaccaggcatggacgaagcggcccgccagggctttctcgatcgcttt
gtagcggatggccgtggggtgggctttgcggtgctgggtggtgcattcggggagggggtg
gacttgccgggcacacggctgatcggcgcgtttgtcgccaccctcgggctaccccaggtc
aacccggtcaacgagcagttcaagcagcgcctggggcggcagtttggtgcggggttcgat
tacgcctatctctacccgggcgtgcgcaaggttatccaggcggcaggccgggtcatccgg
ggcgaccaggaccgtggcgttctggtcttgatcgacgagcgcttcgccgaaccccgagtg
cagcagatgttcccggggtggtggccggcgccgggaggttaa
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integrated database retrieval system
