Pseudomonas plecoglossicida: RK21_03163
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Entry
RK21_03163 CDS
T03646
Name
(GenBank) Fis family GAF modulated sigma54 specific transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppj
Pseudomonas plecoglossicida
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppj03000
]
RK21_03163
Transcription factors [BR:
ppj03000
]
Prokaryotic type
Helix-turn-helix
Other families
RK21_03163
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
Mg_chelatase
AAA_2
HTH_30
PAS_4
HTH_7
AAA_7
AAA_3
HTH_22
HTH_3
RWP-RK
HTH_AsnC-type
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AJG14671
UniProt:
A0A0B5KGE7
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Position
3308549..3310309
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AA seq
586 aa
AA seq
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MAASASPHAQLIQASWARCRDHGLQPQHAPDFDCLTRAELSALLERRQALLRLTREAVLP
QYAHLLGNASYLVMLADASGCLLDSWGSRRFIEPRQQHGFSAGAHWHERGVGTNALGTAL
VCAEAIHVGQDEHFLRQNRYMSSAAAPLFDAERQLVGVLDVASDGYLPASQTLGLVRMMG
QSLENRLILAKHADQHAQLIFNSASDNLDSPWAGLLVFDEQGQVLAANHRADTLLGGNPL
QQNIEQLFQLPLQQLLSHPRQQPFALQATGRNRFHCQWQPPRGAPARPAAISAEPRLEKA
LAQAGLLLEKDIPVLVQGETGVGKEVFVDTLHRASSRASQPLIAVNCAAIPAELVESELF
GYDKGAFTGAHQKGNPGLIRKAHHGILFLDEIGDMPLPTQARLLRVLQTRSIQPLGSGKP
VAVDIRVVSASNRDLAEEVRAGRFRQDLYYRIAGLAVVLPPLRERNDRRQLIEQVHARYR
DPGQPARLPAAIIELLDRHPWPGNMRELVSVLQVALALAGNEPVGLEHLPAGFLAEAQVP
VPEPVPIATEEADLRELVEQANGNLSAVARGLGISRTTLYKRLRER
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggccgcatccgcttcgccccatgcccaactgatccaggcctcctgggcccgctgccgc
gaccacggcctgcaaccccaacacgccccggacttcgactgcctgacccgcgccgagctg
agcgccctgctggagcggcgccaggccctgctgcgcctgacccgcgaagcggtgctgccg
caatatgcccacctgctgggcaatgccagctacctggtgatgctggccgatgccagcggt
tgcctgctcgacagctggggctcgcggcggttcatcgagccgcgccagcagcatggtttc
agcgccggggcccactggcacgagcgcggtgtcggcaccaatgcgctgggcaccgcactg
gtctgcgccgaggcgattcatgttggccaggacgagcacttcctgcgccagaaccgctat
atgtccagcgccgccgcgccgctgttcgacgccgaacggcagctggtcggggtgctcgat
gtggccagcgacggctacctgcccgccagccagaccttgggcctggtacgcatgatgggc
cagagcctggagaaccgcctgatcctcgccaagcatgccgaccagcacgcgcaactgatc
ttcaacagcgcctccgacaacctcgacagcccctgggccggcctgctggtgttcgatgag
caggggcaggtgctggccgccaatcaccgggccgacaccttgctcgggggcaacccgctg
cagcagaacatcgagcaactgttccagttgcccctgcaacaactgctcagccatccccgg
caacagcccttcgccctgcaagccaccgggcgcaaccgctttcattgccagtggcagccg
ccgcgcggggcccccgcccgccctgccgccatcagcgccgagccacgcctggagaaggcc
ctggcgcaggccggcctgctgctggaaaaggacatccccgtgctggtgcagggcgaaacc
ggcgtaggcaaggaggtattcgtcgataccctgcaccgggccagcagccgcgccagccag
ccgctcatagccgtcaactgcgcggcgatccccgcagagctggttgagtcggagctgttc
ggctacgacaagggcgcgttcaccggcgcccatcagaagggcaacccggggctaattcgc
aaggcccaccacggcatcctgttcctcgacgaaattggcgacatgccgttgcccacccag
gcccgcctgctgcgcgtgctgcagacgcgcagtatccagccattgggcagcggcaaaccg
gtggcggtggatattcgcgtggtgtcggcgagcaaccgcgacctggccgaagaagtgcgc
gccgggcgctttcgccaggacctgtattaccgcatcgccgggctggcagtggttttgccg
ccgctgcgcgagcgcaatgaccgccggcagctgatcgagcaggtgcatgcgcgctaccgt
gaccccgggcagcctgcgcggctgcctgcggccattatcgagctgctagaccggcacccc
tggccggggaatatgcgtgaactggtgagtgtgctgcaggtggcgctggccttggcgggt
aatgagccggttggcctggaacacctgcctgcgggttttctcgccgaggcgcaggtacct
gtgcctgagcctgtgccgattgcgaccgaagaggcggacctgcgcgagctggtggaacaa
gccaatggcaacctctcggcggtggcgcgcgggctcgggatcagccgcaccacgctgtac
aagcggctgcgtgagcgatga
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