Pseudomonas plecoglossicida: RK21_03405
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Entry
RK21_03405 CDS
T03646
Name
(GenBank) type IV secretion protein Rhs
Organism
ppj
Pseudomonas plecoglossicida
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
PAAR_motif
RHS
WHH
Colicin-DNase
TEN_YD-shell
Motif
Other DBs
NCBI-ProteinID:
AJG14913
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All DBs
Position
complement(3576033..3580265)
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AA seq
1410 aa
AA seq
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MFEAARFGDEISHTGALGGFLLGAALGIALVATVAIATFTCGLGVALLAGIAAGLGGSLL
TAAGEALGSLFSSPSGTILTASPNVFINSRKAARVEKSIGACDKHPGPVQIAEGSTNVFI
NGVAAARKGDKLTCGATISGGSNNVFIGGGTYRYLPVDDEVPEWLRTTVDVLMAIAGAAS
GLANVLKMGTQAGMKAALPCALKFTAGFIAGEVAARYMVEPVARRVLGGLVGNPVDLTTG
RKLIPDEIDFSLPGLMPIEWSRFYASDLTVDSVLGRGWVLPWEQSLRRRGSFIYLTDNQG
RKVPFVTLQPGERIYNPHEQVYLVCTEGGHYILQTRDNLFFYFGEVPDTNSEVPLQRIEN
VLGHFLHFTRTPDGTLTDISGTGGTRVHLHYDHPLGRLTDIKRVVNDQAVETLTQYRYDE
HGQLSAVINRNGHTVRSFSYAEGLMVTHSNALGLGCHYRWETLGGQPRVVEHWTTDGERF
HFRYDLDARTSWATDVLGRELEVQYNPDHRVIASRDYGGERYATELDDNGNMVDLTLADG
NRLQFKYDEFSRLLEETDPLGRKTTYEYHHLTTLVTQVSYPDGSTWRARYDEKGNLLAEF
DALGQMTEYLNSDDGLPHTIIDATYKSKYLWWNTLAQVERYQDCSGKNTWYRYDERQHLV
AVTDALNQTTTLERKPDGEVLRISHPDGTAETFTYNDLGQVLDHTDGKGQITRLLRTSRG
LPSNRRDPKGGTVRYEYDKAWRLTGLVNENNATYRFAYDASDRLTEEVRVDNLTRRFSYN
LGGHLTRLDEIGYGENAERPERHTLFERDSIGRLVAKINRDASQTFAYDDSDRLLSIERQ
PTGIGKQLGISEEKLEYTYDLLGRLIKEITSDGTLCYEYDPLGNLTTLTLPDGRKVNHLY
YGSGHLHQLNLDGQVISDMERDDLHREVYRTQGKLTSCFGYDEMGRKARQYASMLPADKL
SQVHNTGINTSLLVEHAYNPIHRRYQYDPAGELVRTLDKLRGEIKYEYEANGQLRSRDTG
SLVGSEEFRYDPAGNRLDFNARQFAKSRDNRITHWRDQEYRYDPWGNLIEKCSEYGNRLQ
RFGYDGENRLVRAETWVNGKLESTGHYRYDSLGRRVAKLAEINGQVEQKRFLWQGLRMLR
EETPGQSILYLYEPGSYAPLARVDQAEGEEQKLYYFHTDQIGTPLEVTDSDGKIVWQATY
RSWGAIESLPINEIEQNLRFQGQYFDSETGLHYNTFRYYGPEIGQFITQDPIGLGGGWNL
YKYANNPVVWVDPFGLDALSTLAERGYFGITKTLGGGLDYSGSNALYAKNPGVNPIVVIE
YTGNYIEDFEAANKVAELNQKTTPRGYVWHHVDDYNPKTNKGTMQLVEQRAHQGVPHNGG
VSQYKAATGKAYTFPARKPVAAKKAGGISC
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaagcggccaggtttggcgacgagatttcacacaccggcgcattgggcggcttc
ctgctgggcgctgccctgggtatcgcactggtggccacggtggccatcgccaccttcacc
tgcgggttaggcgtggctttgctggccggcatcgcggcaggtctcgggggcagcttgctg
accgctgccggcgaggcactgggcagtctgttctcatccccctcagggacgatactgacg
gcctcgcccaacgtcttcataaatagccgcaaggccgcccgcgtcgagaaaagcatcggt
gcctgcgacaagcaccccggcccggtgcagatcgccgagggctcgaccaatgtcttcatc
aatggcgtcgcggcggcgcgcaagggcgacaagctgacctgcggcgcgaccatttccggg
ggttcgaacaacgtcttcatcggcggtggcacttaccgctacctgcccgtggatgacgaa
gtcccggagtggctgcgcaccaccgtggatgtgctgatggcgattgctggcgcagccagt
ggccttgcgaatgtgctcaagatgggtacccaggccggtatgaaggccgccctaccttgt
gccctgaaattcacggccggcttcattgctggcgaagtggccgcccgctacatggtcgag
cctgtggcacgcagggtgttgggtggactggttggcaacccggtcgacctcaccaccggc
cgcaagctgatccccgatgaaattgacttcagcctcccgggcttgatgccgatcgagtgg
tcacgtttctacgccagcgaccttaccgtcgacagcgtgctcgggcgcggctgggtgctg
ccctgggagcaaagcctgcgtcggcggggctcattcatttacctcaccgacaaccaaggc
cgcaaagttccgttcgtgaccctgcaaccgggcgaacggatctacaacccgcacgagcag
gtgtacctggtgtgcaccgagggcggccactacatcctgcaaacgcgggacaacctgttc
ttctacttcggcgaagtgccagacaccaacagcgaagtgccgctgcaacgcatcgagaac
gttctcggtcacttcctgcatttcacccgcacgcctgacggtacgctgaccgacatcagc
ggcaccggcggcacccgcgtgcacctgcactacgaccacccgctgggccgcctgaccgac
atcaagcgcgtggtgaacgaccaggcggtcgaaacgctcacccagtaccgctacgatgaa
cacggccagttgagcgcggtgatcaaccgcaacggccacaccgtgcgcagtttcagctac
gccgaaggcctgatggtaacccacagcaacgcgctgggcctgggctgccattaccgttgg
gaaactctcggcggccagccgcgcgtggtcgagcactggaccaccgatggcgaacgcttc
cacttccgctacgacctcgacgcccgcaccagctgggccaccgacgtgctcggccgcgag
ctggaagtgcagtacaaccccgaccaccgggtgatcgccagccgcgactacggcggcgaa
cgctacgccaccgagctggacgacaatggcaacatggtcgacctgaccttggcggacggt
aaccgcctgcaattcaagtacgacgaattctcccgcctgctcgaagaaaccgacccgctg
ggccgcaagaccacctacgaatatcaccacctgaccacgctggtgacccaggtcagttac
ccggatggcagcacctggcgggcgcgctacgacgaaaagggcaacctgctcgccgaattc
gatgccctgggtcaaatgaccgaatacctgaacagcgatgacggcctgccgcacaccatt
atcgacgcgacctacaagtccaagtacctgtggtggaacaccttggcacaggtcgagcgt
taccaggattgttcgggcaagaatacctggtaccgctacgacgaacgccagcacctcgtc
gcggtaaccgatgcgctgaaccagaccaccacgctggagcgcaagcccgacggtgaggtg
ctgcgcatcagccatcccgacggcacggcggaaacttttacctacaacgaccttggtcag
gtgctcgaccacaccgatggcaaaggccagatcacccgcctgctacgcacttcccgtggt
ttgccgagtaaccgccgggacccgaaaggagggacggttcgttacgagtacgacaaggcc
tggcgtctgaccgggttggtgaacgagaacaacgccacgtaccgctttgcctatgacgcc
tcggaccggctgactgaagaagtgcgggtggataacctgacccggcgtttcagctacaac
ctcggcggccatctgacccggctggatgagattggctatggcgaaaatgccgagcggccg
gagcggcatacgctgttcgagcgtgacagcattggccggttggtcgccaagatcaaccgc
gatgcgagccagaccttcgcgtacgacgacagcgaccggttgctgagcatcgagcggcag
ccgaccggaatcggcaagcagctaggaatcagcgaagaaaagctggagtacacctacgat
ttgctgggccggctgatcaaagaaatcacctccgacggcacgctctgctacgaatacgac
ccgctcggcaatctgactacgctaaccctgccggacggccgcaaggtcaatcacctgtac
tacggcagtgggcatctgcaccaactgaacctggacggtcaggtgatcagcgacatggag
cgtgatgacctgcaccgcgaggtttaccggacccagggcaagctcaccagttgtttcggt
tatgacgagatggggcgcaaggcgcggcaatacgcctcgatgctgcccgccgacaagctc
tcgcaggtgcacaacaccggtatcaatacctcattgctggtggagcatgcgtacaacccg
attcaccgccgttaccaatacgacccggcaggtgaactggtgcgtacgctcgacaagctg
cgtggcgagatcaagtacgagtacgaagcgaacggccagttgcgcagccgcgatacgggc
tcgctggttggcagcgaagagtttcgttacgaccctgcgggcaaccgcttggatttcaat
gcccggcaatttgccaagtccagggacaaccgcatcacacactggcgggaccaggagtat
cgttacgacccgtggggcaacctgatcgaaaaatgctcggaatatggcaaccggttgcag
cgcttcggttatgacggtgaaaaccggctggtgcgggcggagacatgggtcaatggcaag
ctggagagtaccgggcactaccgttatgacagcctggggcggcgggtggccaagctggct
gagatcaatggccaggtcgagcagaagcgcttcctctggcaagggctgagaatgctgcgg
gaggagacgccggggcagagcatcctgtatctgtatgagccgggtagctatgcgccgttg
gcgcgggtcgatcaggcggaaggggaggagcagaagctttattatttccatactgaccag
attggtacgccgctggaggtcacggacagtgacggtaagatcgtctggcaggcgacgtat
cgctcgtggggggcaatagagagtctgccgatcaatgagatcgagcagaatttgcgtttc
caaggtcagtactttgatagtgaaacgggactgcactacaacacgttccggtactatggt
cctgagatagggcaatttatcacccaagacccaattggcttgggcgggggatggaatctc
tataaatatgccaacaatccggttgtttgggttgatccctttggattggatgcattaagc
actcttgccgagcgtggttattttggtataactaaaacactaggtggtggcctagattat
tctggtagcaatgcgctttatgcgaaaaatccaggggtcaatcccatagtggtaattgaa
tatacgggaaattatattgaggactttgaggctgcaaacaaagtggccgaattaaatcaa
aaaaccacgccgcgaggctatgtgtggcatcatgtggatgactataatcctaaaaccaat
aaaggcactatgcaattagtagagcagagggctcatcaaggtgttcctcataatggagga
gtatctcaatataaagctgcaaccggaaaagcttatacattcccagccagaaagccagtg
gccgcgaaaaaagcaggaggaatttcatgttag
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