Pseudomonas plecoglossicida: RK21_03464
Help
Entry
RK21_03464 CDS
T03646
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RK21_03464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_03464
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RK21_03464
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RK21_03464
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
HAMP
DUF8810
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AJG14972
LinkDB
All DBs
Position
complement(3644249..3646264)
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVENIAAFDPLTGEVFRKLPRF
TFYPKSHYVTPRETLLEAVEGIKEELKDRLEYLQKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVAQGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADNITGSMQRAIDETERRREKQIAFNQANGIVPKGVVKDITDIMEGATV
PGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDE
IAQLRERLITS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttccagctcgtcacccgtttccagccggccggcgaccagcccgaggccatc
cgccagatggtcgaaggtatcgaggcggggctgtcgcaccagacgctgctcggggtgact
ggctcgggcaagaccttcagcatcgccaacgtcattcagcaggtgcagcggcctaccctg
gtgcttgcgccgaacaagaccctggccgcgcagctttatggcgaattcaaggcattcttc
cccaacaatgcggtggagtacttcgtttcctactacgactactaccagcctgaagcctac
gtaccgtcgtccgacaccttcatcgagaaggacgcttcgatcaacgaccacatcgagcag
atgcgcctgtcagcgaccaaggcattgctggagcggcgtgacgcgatcatcgtcaccacc
gtgtcgtgcatctacggcctgggcagccccgagacctacctgaaaatggtcctgcacgtg
gaccgcggcgacaagctcgaccagcgcgcgctgctgcgccgcctggccgacctgcaatac
acccgcaacgagatggactttgcccgcgccaccttccgcgtgcgcggcgatgtgatcgac
atcttcccggccgaatcggacctcgaggccatccgcgtcgaactgttcgatgacgaggtg
gagaacatcgcagccttcgacccgctgaccggcgaggtcttccgcaaactgccgcgtttc
accttctaccccaagagccactacgtcaccccgcgggaaaccctgctggaggcggtggaa
ggcatcaaggaagagctcaaggaccgcctggagtacctacagaaggccaacaagctggtc
gaggcccagcgcctggagcaacgcacccgcttcgatctggagatgatcctggagctgggc
tactgcaacggcatcgagaactactcgcgctacctgtccgggcgcccggccggggcgccg
ccgcccaccctgtacgactacctgccgcccgatgcgctgctggtgatcgacgaatcccac
gtcagcgttccgcaggtcggcgccatgtacaagggcgaccgctcgcgcaaggaaaccctg
gtcgagtacggcttccgcctgccttcggcgctggacaaccggccgatgcgtttcgacgag
tgggaggacgtcagcccgcagaccatcttcgtctccgccaccccgggtccctatgaggcc
gagcacgccgggcgcgtggtagagcaggtggtgcgccccaccggcctggtcgacccacag
gtagaagtacgcccggcgcttacccaggtggatgacctgctgtcggaaatccgcaagcgc
gtggcacagggcgagcgggtgctggccaccacgttgaccaagcgcatggccgaagacctc
accgactacctggccgaccacgatgtgcgggtgcgttacctgcactcggacatcgacacc
gtcgagcgggtggagatcatccgcgacttgcgcctgggtaccttcgacgtgctggtgggc
atcaaccttctgcgtgagggcctggatatgcccgaggtgtcgctcgtggcgatcctcgat
gccgacaaggaaggtttcctgcgctccgagcgctcactgatccagaccatcggccgtgct
gcgcgtaacctcaatggccgggccatcctgtatgccgacaacatcaccggttccatgcag
cgcgccatcgacgagaccgagcgtcgtcgcgagaagcagatcgccttcaaccaggccaat
ggaatcgtgcccaaaggcgtggtcaaggacatcaccgatatcatggaaggcgcgaccgtg
cccggcgcgcgcagcaagaagcgcaagggcatggccaaggcagcggaggagagcgcccgt
tacgaggccgagctgcgcacgccgggcgagatcaccaagcgcatcaagcagctggaagag
aagatgatgcagttcgcccgcgatctggagttcgaggccgcggcgcaattgcgcgacgag
attgcccaactgcgcgagcggctgatcaccagctga
DBGET
integrated database retrieval system
