Pseudomonas plecoglossicida: RK21_03525
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Entry
RK21_03525 CDS
T03646
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RK21_03525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppj03019
]
RK21_03525
03009 Ribosome biogenesis [BR:
ppj03009
]
RK21_03525
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RK21_03525
Messenger RNA biogenesis [BR:
ppj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RK21_03525
Ribosome biogenesis [BR:
ppj03009
]
Prokaryotic type
rRNA helicases
RK21_03525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AJG15033
LinkDB
All DBs
Position
complement(3707145..3708824)
Genome browser
AA seq
559 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIEQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTADLGCSARAL
AAALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERSERGDRERRAPMPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatctcaatccgaatattgttgctgcc
gttctggcgaccggctacgaagagccgtccgccattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgatgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagttgctacagctttcgaaacctacgccaagcag
atgccgggcgtgaacgtggtcgccgtctacggtggtgccccgatgggcccacagttgcgt
gcgatccgcaacggcgcgcaaatcgtcgtggccacccctggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgcagtacctggtactggacgaagccgacgag
atgctcaagctgggctttatggacgacctcgaagtgatcttcgatgccatcccggccagc
cgccagaccgtgctgttctccgccaccttgccgtcgtcgatccgctcgatcgccgaacgc
cacctgcgcgagcccaagcacgtcaagatccagagcaagacccagaccgttaccgcgatc
gagcaggcccacctgatggtccacgccgaccagaagatcccggctgtgctgcgtctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggcctccgcgctggaagccaagggttacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgcctggacatcgttgtc
gctaccgacgtcgctgcccgtggcctggacgtaccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtacaccgtatcggccgtaccggccgtgccggt
cgcgatggccgtgcactgctgctggtcaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgcgtaaccgggcagaaagttgccgaagcccgcctgccgaatgcccaggccgtgctg
gatgcccgcatcaagaagctgacctcgagcctggcgccgctggttgccgaagcagaagcc
acccacggtgagctgttcgaccgcctgaccgccgacctgggttgcagcgcgcgtgccctg
gctgctgccctgctgcgcaaggccaccaatggccaggcgctggacctggctgcggtagag
cgtgagcagccgctggtgccgagcttcgccccgcgtggtgagcgtaccgagcgtggtgag
cgtggcgagcgctcggagcgtggtgaccgcgagcgccgtgcgccgatgccgctggccgaa
ggccgcgtgcgttgccgtactgccctgggtgcccgtgacggcatcgctgccaagaacctg
ctgggcgcgatcctcaacgagggtggtctggctcgtgacgccatcggccgcatccaggtg
cgcgacagcttcagcctggtcgagctgccggaagatggcctggagaagctgctgtccaag
ctcaaggacacccgcgtggctggcaagcagctgaagctgcgtcgctaccgcgaggattga
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