Pseudomonas plecoglossicida: RK21_04020
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Entry
RK21_04020 CDS
T03646
Name
(GenBank) hypothetical protein
KO
K06958
RNase adapter protein RapZ
Organism
ppj
Pseudomonas plecoglossicida
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppj03019
]
RK21_04020
Messenger RNA biogenesis [BR:
ppj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RK21_04020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PapZ_C
RapZ-like_N
AAA_18
AAA_29
SKI
AAA_16
AAA_22
Rad17
mTERF
Motif
Other DBs
NCBI-ProteinID:
AJG15528
LinkDB
All DBs
Position
4217598..4218452
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AA seq
284 aa
AA seq
DB search
MRLIIVSGRSGSGKSTALDVLEDNGFYCIDNLPAGLLPQLAENALINTELQQPKVAVSID
ARNLPSHLTRFPELLEEARARHIQCDVLYLDADEDVLLKRFSETRRRHPLTNANRSLAEA
IRVESELLGPIADLADLKIDTTSLNLYQLRDSIKLRLLNQPEPGTAFLVESFGFKRGMPV
DADLVFDVRCLPNPYWKPELREHSGLDQPVIDYLAAQPDVEEMFNDISSYLLKWLPRFAA
SNRAYVTIAIGCTGGHHRSVYITERLGQLLQQSLKNVQVRHRDL
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgatcatcgtcagcggccggtccggctccggcaagagcaccgccctcgatgtc
ctggaagacaacggtttctactgcattgacaacctgcccgccgggctgctgccgcaactg
gcggaaaatgcgctgatcaacaccgagttgcagcaacccaaggtcgccgtgtcgatcgac
gcgcgcaacttgcccagccacctgacgcgttttcccgagttgctcgaagaagcccgcgcc
cggcatatccagtgcgacgtgctgtacctggatgccgacgaagacgtactgctcaagcgc
ttctcggaaacccgccgacgccacccgctgaccaacgccaaccgctcgctcgcggaagcg
atccgggtggaaagcgaattgttggggccgattgcagacctggccgacctgaagatcgac
accaccagcctgaacctgtaccagctgcgtgattcgatcaagctgcgcctgctcaaccag
ccagagcctggcaccgcgttcctggtcgagtcgttcggtttcaagcgcggaatgccggtc
gatgccgacctggtgttcgatgtgcgctgcctgcccaacccctactggaagcccgagctg
cgtgagcactccggcctcgaccaaccggtgatcgactacctggccgcacagccggatgtc
gaagagatgttcaacgacatttccagctacctgctcaagtggctgccccgcttcgccgcc
agcaaccgtgcctacgtcaccattgccattggctgcaccggcggccaccaccgctcggtg
tacatcaccgaacgccttggccagttgttgcagcaatccctgaaaaacgtccaggtccgc
caccgcgacctctag
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