Pseudomonas plecoglossicida: RK21_04991
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Entry
RK21_04991 CDS
T03646
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03420
Nucleotide excision repair
ppj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RK21_04991
03430 Mismatch repair
RK21_04991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_04991
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RK21_04991
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RK21_04991
MMR (mismatch excision repair)
Other MMR factors
RK21_04991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_11
AAA_22
Viral_helicase1
DUF5681
Motif
Other DBs
NCBI-ProteinID:
AJG16499
LinkDB
All DBs
Position
5229225..5231411
Genome browser
AA seq
728 aa
AA seq
DB search
MRTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD
DQQRLIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLSTMRDVYTAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLA
RGGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTCGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKKGNARNEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQLSMWEAMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPL
HTMTQTTIEQSGLIIYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGH
ASLEAGDTQADEHEDSVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGA
KTATNSNLFANASIPQTSFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAEGSKWLML
GYAKLEAI
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacagacgacctctccctcctgctgaattccctcaacgatgcccaacgccaggcc
gtagcggccacgctagggcgtcaactggtgcttgctggcgccggttccggtaaaacccgc
gtgctggtgcaccgcattgcctggctgatccaggtggagcaggcatcgccgcactcgatc
ctgtcggtgaccttcaccaacaaggccgcggcagaaatgcgccagcgtatcgagcaactg
ctgggtatcaacccggcgggcatgtgggtcggcaccttccacggcctggcccatcgcctg
ctgcgggcccattggcaggaagcgaggctggtgcagaacttccagatcctcgacagcgac
gaccagcagcgcctgatcaagcgggtgatgcgcgagttgggcctggacgagcagaaatgg
ccggcacgccaggcccagtggttcatcaacgggcaaaaggacgaaggcctgcgtccacag
catatccaggccgggggcgacctgttcctgtcgaccatgcgcgacgtctataccgcctat
gagcaggcctgcgagcgcgccggggtcatcgacttctccgagctgctgctgcgcgccctg
gacttgtggcgcgaccacccgggcctgctggagcactaccagcggcgcttccgccacgtg
ctggtggacgagttccaggataccaacgccgtgcagtacgcctggctgcgcctgctggcg
cgcggcggtgacagcctgatggcggtgggcgatgacgaccagtcgatctacggctggcgc
ggtgccaagatcgagaacattcaccagtacactgccgacttccccgacgccgagatgatc
cgcctggagcagaactaccgctccacctgtggcatcctcaaggcggcgaacgcgctgatc
gccaacaacagcgggcgcctgggcaaagagctgtggaccgacatgggtgaaggcgaaccg
ctgaccctgtatgcggcctacaacgagcacgacgaagcgcgctacgtggtggaaaccatc
gagagcctggtcaagaagggcaatgcgcgcaacgagatcgccatactgtaccgttccaac
gcccagtcgcgggtgctggaagaagccctgctgcgcgaacgcatcccctaccgcatctat
ggcggtcagcgcttcttcgagcgcgccgaaatcaagaacgccatggcttacctgcggctg
atcgaaggccgcggtaacgatgctgccctggaacgggtgatcaacgtgccgccacgtggc
attggcgaaaaaactgtcgaagccatacgcgagcacgcccgccacagccagctgtcgatg
tgggaagcaatgtgccagctgcttgccgccaaagccctgaaaggccgcgctgccagtgcc
ctgggtgcattcatcgagctgatcgaggggttggctgccaaggtcgtggacatgccgctg
cataccatgacccaaaccaccatcgagcagtccgggctgatcatctaccaccaggaagaa
aagggtgagaagggccaggcacgggtagaaaaccttgaggaactggtcagcgcagcgcgc
aacttcgagtctaccgacgaagacgccgacctctcgcctctctcggcattccttggccac
gcctcgctcgaagcaggcgatacacaggccgacgagcatgaagacagcgtccagctgatg
accttgcacagtgccaagggcctggagttcccgtatgtgttcctggtgggcatggaagaa
ggcctgttcccgcacaagatgagcctggaagagcctggccgcctggaagaggaacgccgc
ctggcttatgtgggcatcacccgcgccatgcgccagctggtcatgacctacgccgaaacg
cgtcgcctgtatggcagcgagacctacaacaaggtgtcacgtttcgtacgagaaattccg
gcaggcctggttcaggaagtgcgcctttccaacagcgtcagccgcccgttcggcggggcc
aagacggccacgaacagcaacctgttcgccaatgccagcattccgcagacctcgttcaat
ctgggccagcgtgttcagcatgcggtgtttggcgagggtgtgatcctcaacttcgaaggc
tccggcgcccaggcgcgggtgcaggtaaattttgccgaaggcagcaagtggctgatgctg
gggtatgccaagctcgaggccatctga
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