Pseudomonas plecoglossicida: RK21_05211
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Entry
RK21_05211 CDS
T03646
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03030
DNA replication
ppj03410
Base excision repair
ppj03420
Nucleotide excision repair
ppj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RK21_05211
03410 Base excision repair
RK21_05211
03420 Nucleotide excision repair
RK21_05211
03440 Homologous recombination
RK21_05211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppj03032
]
RK21_05211
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_05211
Enzymes [BR:
ppj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RK21_05211
DNA replication proteins [BR:
ppj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RK21_05211
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RK21_05211
NER (nucleotide excision repair)
GGR (global genome repair) factors
RK21_05211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
AJG16719
LinkDB
All DBs
Position
5458031..5460778
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SSAALDRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDIEVDALVCGEPDRDALLALYTEMEFKSWIAEVQRDAAKAGDEI
APVAEQVAKVEPRYETILDQARFDFWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVE
PHEAAYVPLAHDYEGAPAQLDRTAVLLALKPLLEDPGKAKVGQNAKYDINILANGSPAIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQIHLDKA
GPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLQV
QSGELGLKMAELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTTKGQPSTAEAVL
DELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDV
HRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAA
DIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVELVKDEIRQHMSKAAKLDVP
LLVEAGIGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctgtaccgcgccttccac
gcgctgccgccgttgactacctccaaaggcatgccgaccggcgcggtgaagggggtgctg
aacatgctcaagagcctgcgcaagcaataccccgacagcctgttcgcggtggtgttcgac
gccaagggtggcaccttccgcgatgccatgttcgctgaatacaaggcaaaccgcccgagc
atgcctgacgacctgcgggtacagatcgagccgctgcacgccagcgtcaaggcgctgggc
tacccgctgctgtgcgtcgagggggtcgaggccgacgacgtgatcggcaccctggcgcgc
agcagcgccgcgttggaccgcccggtgatcatctcgaccggtgacaaggatatggcgcag
ctggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggct
ggcgtgcacgagaaatttggcgtcgggccggaacatatcatcgacttcctggcgctgatg
ggcgacaaggtcgacaacatccccggagtgccgggcgtgggcgaaaaaaccgcggtgggc
ctgctgaccggtatcggcggcggtctcagcgacctgtatgccaatctggacaaggtcccg
acgctggccattcgcggtgccaagaccctgccggccaagctggaagagcaccgcgacgcg
gcgttcctatcctatgagctggctaccatcaaggtcgatgtgccgctggatatcgaagta
gatgccctggtgtgcggcgaacctgatcgcgacgcgttgctggcgctgtacaccgagatg
gaattcaagagctggatcgccgaggtgcagcgtgacgctgccaaggccggtgacgaaatc
gcgccggtcgcggagcaggtggccaaggtcgagcccaggtacgaaaccattctcgatcag
gcccgtttcgacttctggctggagaagctgcgccaggcgccattgttcgctttcgacacc
gagaccaccggcctggacgctcagcaggcccagctggtcggcctgtcgttcgccgttgaa
ccgcacgaagcggcctatgtgccgctggctcacgactatgaaggcgcgccggcccagttg
gaccgcactgccgtgctgctggcgctgaagccactgctggaagacccgggcaaggccaag
gtcgggcagaacgccaagtacgatatcaacatccttgccaatggctcgcccgccatcgaa
atgcgcggcgttgcctacgacaccatgctcgagtcgtacgtgctgaactccaccgccacc
cgtcacgacatggacagcctggcgcagaagtacctcgaccataccaccattgccttcgag
gatatcgccggcaagggcgccaagcagctgaccttcaaccagatccaccttgacaaggcc
ggcccctacgctgccgaagacgccgacatcaccctgcgcctgcaccaggcgctgcaggcg
cgcctggcgcagacgccgagcgtgcagccggtgctgatggacatcgagatgccgctggtg
ccggtgctggccaagatcgagcgccagggggcgctggtcgatgccgcgttgctgcaggtg
cagagcggtgagctggggctaaagatggccgagctcgagcagcgcgcctatgagctggcc
ggtgaggagttcaacctcggctcgcccaagcaactgggcgcgatcctatacgacaagctg
ggcatgccggtgctaagcaagaccaccaagggccagccatccacggcagaagcggtgctc
gacgaactggccgagcaaggctacccgctgccggaggtactgatgcagtaccgcagcctg
agcaagctcaagagcacctacaccgacaagctgccggggcagatcaacccgcgcaccggg
cgtatccacacctcataccagcaggcggtggcggccaccggtcgactgtcgtccagcgac
ccgaacctgcagaacatcccgatccgtactgccgaaggccggcgcatccgccaggctttc
gttgccagcccgggttacaagctgctggcggcggactactcgcagatcgagttgcgcatc
atggcccacctggccaaggacgaaggcttgctgcatgccttccgcaacaacctggacgtg
caccgcgccacggcggcggaagtattcggcgtagccttggaagacgtcaccaccgatcag
cgccgcagtgccaaggccatcaacttcggcctgatctacggcatgagcgcctttggcctg
gccaagcagatcggcgtcgaccgcaagcagtcgcaggattacatcgaccgctacttcgcc
cgctatccgggcgtgttggcgtacatggagcgcacccgcgcccaggcggcggagcaaggc
tttgtagaaaccctgttcggccgccgcctgtacctgccggatatcaatgccaagaacccg
gccctgcgcaaaggcgccgagcgcacggcgatcaacgccccgatgcagggcactgcggcc
gacatcatcaagcgggccatggtcaatgtggataactggctgagcgagagcgggctggat
gcccgggtgatcctgcaggtgcacgacgaactggtgctggaagtgcgcgaggacctggtg
gagctggtgaaagatgaaattcgccagcacatgagcaaggccgcgaaactggatgtgccg
ctgctggtcgaggcaggaattggtgcgaattgggacgaagctcactga
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