Pseudomonas plecoglossicida: RK21_05774
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Entry
RK21_05774 CDS
T03646
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RK21_05774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppj03019
]
RK21_05774
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RK21_05774
Messenger RNA biogenesis [BR:
ppj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RK21_05774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJG17282
UniProt:
A0A099N6T3
LinkDB
All DBs
Position
6093696..6095027
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AA seq
443 aa
AA seq
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MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR
QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKVDLFCHLLR
KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREIQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE
VLTRQTLPRHEEPDFIPDHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSAESGS
AEPAVKAVRKVPSFNGGARKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgccaaactcggcctgatcgaaccgctgctgcgcaccctgcagcaactggac
tacaccaccccgaccccggtgcaggccaaggccatccccgctgtgctggccggccgcgac
ctgatggccgcggcccagaccggcaccggcaagaccgcgggctttgccctgcctgtgctg
cagcgcctggcgctggaaggcgaaaaggtggccagcaactcgatccgcgcgctggtgctg
gtgcccactcgtgagttggccgagcaggtgcacaacaatgtgcgcgagtatgccgagaac
ctgccgctgagcacctacgcggtgtatggcggggtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtcgacctgctggtggccaccccggggcgcttgctcgacctgttccgg
cagaacgccgtgaagttcaaccaggtgcagaccctggtgctggacgaagccgaccgcatg
ctcgacctgggctttgccgaagagctgcagtcggtgtacgccgcgctgccacgcaagcgc
cagacgttgctgttctccgccactttttccgaccagatccgcatgctggcggggctagcc
ctgaacgacccgctgagcatcgaagtcagcccgcgcaatgccacggccaccagcgtcaag
cagtggctggtgcctgtggataaaaaacgcaaggtcgacctgttctgccacctgctgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgtaatggcgtcgatcaactg
gtggagcgcttgctggccgagggtgtgaatgccgacggtatccacggtgaccgcccgcag
gccactcgccagcgcgcgctggacagcttcaaggcccgcgaaatccaggtgctggtggcg
accgatgtggcggcccgcggcctggatatcgatgacttgccgctggtggtcaaccttgac
ctgccgatcgttgctgaggattacgtgcaccgcatcgggcgtaccgggcgggcgggcaac
aagggcgaggctatctcgctggtgtgtgccgatgaagtgcagctgctggcggcgatcgaa
gtgctgacgcggcagaccctgccgcgtcatgaagagccggacttcatccctgaccaccgg
gtgccgatgaccgacgccagtggccaggtgatcaagaagccgaagaagcccaagaagccg
aaggaaaacagcgccaagcgcggcttggggcgctggatggacagcgctgaatcaggcagt
gcggagccggcggtgaaggcagtgcgcaaggtgccgagcttcaatggtggggcgcgcaag
cgtaagccgtag
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