Pandoraea pnomenusa 3kgm: U875_00105
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Entry
U875_00105 CDS
T02936
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U875_00105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppk03021
]
U875_00105
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_00105
Enzymes [BR:
ppk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U875_00105
Transcription machinery [BR:
ppk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U875_00105
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U875_00105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
cwf21
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AHB03981
LinkDB
All DBs
Position
15041..19252
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVQQDEQFEAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKKNQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLREIKIDEQVEHLRAELQATGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREKINGRGEGLSFVDVSEVLRAYDNK
EVELASRVNVRITEYTVDAETGEKTPKITLYPTTVGRAILSEILPPGLPFSVLNKSLKKK
EISKLINTAFRRCGLRETVIFVDKLMQSGFRLATRAGISICVDDMLVPTKKEELISEASK
KVKEYDRQYMSGLVTAQERYNNVVDIWGATGDAVGKAMMEQLSKEPTVDRDGNTVDQESF
NSIYMMADSGARGSSAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALRDRI
LGRVAAADVVNPETQETVYEAGTLLDEDVVDMIETLGVDEVRVRTPLTCDTRFGLCAACY
GRDLGRGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSNGTVR
FTATMRYVTNGRGEQIAISRSGEILITDDHGRERERHKVPYGATLLQLDGAQVKAGAQLG
TWDPLTRPIITEHGGYAKFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPASKNVRPQV
KLLDENGVEVKIPGTDHAVTIGFQVGALITIKDGQQVPVGEVLARIPTEAQKTRDITGGL
PRVAELFEARAPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIPKEKQVLVH
DGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITDNGDTRFIIGEQVERSDMLYENDAMIAEGKRPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKARKARETSDRER
HDQIALEEAFAPMPNSVEAPTAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaggacgaacagttcgaagcgatc
aagatcggtctggcctcgccggacaagatccgctcgtggtcgttcggcgaagtgaagaag
ccggagacgatcaactaccggacgttcaagcccgagcgcgacggcctgttctgcgcaaag
atcttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgtgagaagtgcggcgtggaagtcacgctggcgaaggtgcgccgcgag
cgcatgggccacatcgaactggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgttgtac
ttcgaagcgtacgtggtcatcgacccgggcatgacgccgctcaagaagaaccagatcatg
accgaggaggattactacaacaaggtcgaggaatacggcgacgagttccgtgccgagatg
ggcgcggaaggcgtgcgtgagctgctgcgcgagatcaagatcgacgagcaggtggaacac
ctgcgcgccgagctgcaggccacggggtcggaagccaagatcaagaagtacgccaagcgc
ctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatggtgctcgaa
gtgctgccggtgctgccgcccgagctgcgcccgctggtgccgctcgacggtggccgcttc
gcgacctcggacctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgagctcaaggccccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtggactcgctgctcgacaacggtcgtcgcggcaaggcgatgaccggtgcgaac
aagcgcccgctcaagtcgctggccgacatgatcaagggtaagagcggtcgtttccgtcag
aacctgctgggtaagcgcgtggactactcgggccgttcggtgattaccgtgggcccgacg
ctcaagctgcatcagtgcggcctgcccaagctgatggcgctcgaactcttcaagccgttc
atcttccacaagctggaagtgatgggcgtggccacgaccatcaaggccgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
atcatgctgaaccgcgcaccgacgctgcaccgcctgggtattcaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcc
cgtaccctgatgctggcctcgaacaacgtgttgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggcctgtactacgcgacccgcgagaagatcaacggc
cgcggcgaaggcctgtcgttcgtcgacgtctcggaagtgctgcgtgcgtacgacaacaag
gaagtcgaactggcttcgcgcgtgaacgtgcgtatcacggagtacacggtcgacgcggaa
accggcgagaagacgccgaagatcacgctgtacccgacgaccgtcggccgcgcgatcctg
tcggaaatcctgccgccgggcctgccgttctcggtgctgaacaagtcgctcaagaagaag
gaaatctcgaagctgatcaacacggcgttccgtcgttgcggtctgcgcgagacggtgatc
ttcgtcgacaagctgatgcagtcgggcttccgtctggcaacgcgcgccggtatctcgatc
tgcgtcgacgacatgctcgtgccgacgaagaaggaagagctgatcagcgaagcgtcgaag
aaggtcaaggaatacgaccgtcagtacatgtcgggtctggtcacggcgcaagagcgttac
aacaacgtcgtggacatctggggcgcgaccggtgacgcggtgggcaaggcgatgatggag
cagctctcgaaggagccgaccgtcgatcgcgatggcaacaccgtcgatcaggaatcgttc
aactcgatttacatgatggccgactccggcgctcgcggttcgagcgcccagattcgccag
ctcgcggggatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatt
accgcgaacttccgcgaaggcctgaacgtgctgcagtacttcatctcgacccacggtgca
cgtaagggtctggccgatacggcactgaagacggcaaactcgggttacctgacgcgtcgt
ctggtcgatgtgacgcaggatctggtcgtggtcgaggacgattgcggcacgagcaacggc
gtggcgatgaaggcgctggtcgagggcggtgaagtggtcgaagccctgcgcgaccgtatc
ctgggtcgtgtggccgcagccgacgtcgtgaatccggaaacgcaggaaacggtgtacgaa
gcgggcacgctgctcgacgaagacgtcgtcgacatgatcgaaacgctgggcgtggacgaa
gtgcgcgtgcgcacgccgctcacctgcgatacgcgcttcggtctgtgcgccgcctgctat
ggccgcgatctgggccgtggtacgcgcgtgaacgtcggtgaagccgtcggcgtgatcgcg
gcacagtcgatcggtgagccgggcacgcagctgacgatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggcggtggcctcgtcgatcgaagccaagtcgaacggtacggtgcgt
ttcacggcgaccatgcgttacgtgacgaacggccgtggcgagcagatcgcgatttcgcgt
tcgggcgaaatcctgatcacggacgatcatggccgtgagcgcgagcgtcacaaggtgccg
tatggcgccacgctgctgcaactggacggtgctcaggtcaaggccggtgcccagctgggt
acgtgggatccgctgacgcgcccgatcattaccgaacacggcggttacgccaagttcgag
aacgtcgaggaaggtgtcacggttgccaagcagatcgacgatgtgacgggtctgtccacg
ctggtcgtgatcgatccgaagcgtcgtggtccggcgtcgaagaacgtgcgtccgcaggtc
aagctgctcgacgagaatggtgtggaagtgaagatcccgggtaccgatcacgctgtgacg
atcggcttccaggtgggcgcactgatcaccatcaaggacggtcagcaagtgccggtgggt
gaagtgctcgcacgtatcccgacggaagcgcagaagacccgcgatattaccgggggtctg
ccgcgtgtggccgaactgttcgaagcgcgtgcaccgaaggacgccggcattctggccgaa
gtcacgggtaccacgtcgttcggcaaggacacgaagggcaagcagcgtctggtcattacc
gacctcgacggcaaccagcacgaattcctgattccgaaggaaaagcaggtgctggtgcac
gacggccaggtggtgaacaagggcgaaatgatcgtggacggtccggccgatccgcacgac
atcctgcgtctgcagggtatcgaggcgctgtcgcgttacatcgttgacgaagtgcaggac
gtgtaccgcttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttcattatcggcgaacag
gtcgagcgctcggacatgctgtacgagaacgacgccatgatcgccgaaggcaagcgtccg
gcgcagtacgagaacgtgctgctgggtattacgaaggcgtcgctgtcgacggactcgttc
atctcggcggcgtcgttccaggaaacgacgcgcgtgctgaccgaagccgccatcatgggc
aagaaggacgacctgcgtggcttgaaggaaaacgtcatcgtcggccgtctgattccggca
ggtacgggtctggcgtatcacaaggcccgcaaggcccgcgagacgtcggaccgcgagcgt
cacgaccagatcgctctggaagaggcgtttgcgccgatgccgaattcggtggaagccccg
acggccgagtaa
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integrated database retrieval system
