Pandoraea pnomenusa 3kgm: U875_01000
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Entry
U875_01000 CDS
T02936
Name
(GenBank) AMP-dependent synthetase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk00061
Fatty acid biosynthesis
ppk00071
Fatty acid degradation
ppk01100
Metabolic pathways
ppk01212
Fatty acid metabolism
ppk02024
Quorum sensing
ppk04146
Peroxisome
Module
ppk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
U875_01000
00071 Fatty acid degradation
U875_01000
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
U875_01000
09145 Cellular community - prokaryotes
02024 Quorum sensing
U875_01000
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ppk01004
]
U875_01000
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppk04147
]
U875_01000
Enzymes [BR:
ppk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
U875_01000
Lipid biosynthesis proteins [BR:
ppk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
U875_01000
Exosome [BR:
ppk04147
]
Exosomal proteins
Exosomal proteins of breast milk
U875_01000
Exosomal proteins of breast cancer cells
U875_01000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DUF7382
Cyclase_polyket
Motif
Other DBs
NCBI-ProteinID:
AHB04141
LinkDB
All DBs
Position
complement(200619..202163)
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AA seq
514 aa
AA seq
DB search
MNIANTLARAAQRYPDHIATYLGDTPLHDYATLARRCARLAAGLRSMGLADGARVALWMR
NRPEYLEWLYAIWWAGLVAVPINAKLHPREAAFIVGDAAADILLAQADDLQSIAEFVSPS
VVRMTPEDSRVAEWLQVEASQGSGHSAGSLRPGAVASRENDDMAWIFYTSGTTGRPKGVM
LSHRNLWSMAACYLTDVDTPGREDRTLYAAPMSHGAGLYSVIFMMQAAGHVFPASGGFDA
QEMFALAASLGNISCFAAPTMVNRLVRHAQATGAKSDGFRTLVYGGGPMYAADIERALSV
MGPRFVQIYGQGESPMTITVLPREAIAASEHPRWASRLASVGHAHAMVEVVVVDDDGEPV
AAGTPGEVVVRGDVVMQGYWRNPEATAKTLRDGWLWTGDIGVLDDDGYLTLKDRSKDVII
SGGTNIYPREVEEVLLRADGVAEVAVIGEPDAEWGEVVVAYVVCTPGDTLDSAALDAFCL
AHIARFKRPKRYVALDALPKNHYGKVLKTALRSA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgccaataccctcgcccgcgccgcgcagcggtatccggatcacatcgcgacg
tatcttggcgacacgccgctgcacgattacgcaacgctcgcccggcgctgcgcacgcctg
gctgccggcctgcgctcgatggggctggccgacggcgctcgagtggcgctgtggatgcgc
aaccggcccgagtacctcgagtggttgtatgcgatctggtgggccgggctcgtcgccgtg
ccgatcaacgcgaagctgcatccgcgcgaggcggccttcatcgtcggcgacgccgcggcg
gacattctgctggcgcaggcggacgatctccagtccatcgccgaattcgtgtcgccgtcg
gtcgtgcgcatgacaccggaggacagccgcgtcgccgagtggctccaggtcgaagcgagt
caaggaagcgggcactcagcgggcagcctccggcctggcgccgtcgcgtcgcgcgaaaac
gacgatatggcgtggatcttctacacgtctggaacgaccgggcgcccgaagggtgtgatg
ctgtcccatcgaaatctgtggtcgatggccgcgtgctacctgacggacgtcgacacaccc
ggtcgcgaggaccgcaccctgtacgcggccccgatgtcacatggggcgggactctacagc
gtgatcttcatgatgcaggcggcgggccacgtgtttcccgcgtccggtgggttcgatgcg
caggagatgttcgccctggcggcgtcactggggaacatttcgtgtttcgcggcgcccacc
atggtgaaccgtctggtgcggcatgcgcaggccacgggggcaaagtcggacgggttcagg
acgctcgtctacggcggcgggccaatgtacgcggcggacatcgagcgcgcgctttcggtg
atgggacctcgcttcgtgcagatatacggccagggcgagtcaccgatgacgatcacggtg
ctcccgcgcgaggctatcgcggcgagcgaacatccgcgctgggcgtcgcgtctggcgtcg
gtcgggcacgcgcatgccatggtggaagtggtcgtggtcgacgacgacggcgagccggtc
gcggcgggcacgcccggcgaggtcgtggtgcgcggcgacgtcgtgatgcagggctactgg
cgcaatccggaggcgacggcgaagacattgcgcgacggctggctgtggacgggcgatatc
ggcgtgctggacgacgacggctacctcacgctcaaggaccgctcgaaagacgtgatcatc
tcgggcggcacgaacatctatccgcgcgaagtcgaggaggtactgctgcgcgccgacggc
gtcgcggaggtggccgtgatcggcgagccggacgccgagtggggcgaagtcgtggtcgcg
tacgtggtttgcaccccgggggacacgctcgacagcgccgccctcgacgcattctgcctg
gcgcatatcgcacggttcaagcgccccaagcgatatgtggcgctcgacgcactgcctaag
aaccactatggcaaggtgctgaaaacggcgttgcgttcggcctag
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