Pandoraea pnomenusa 3kgm: U875_04035
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Entry
U875_04035 CDS
T02936
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U875_04035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppk03019
]
U875_04035
Enzymes [BR:
ppk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
U875_04035
Messenger RNA biogenesis [BR:
ppk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U875_04035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AHB04666
LinkDB
All DBs
Position
complement(861133..862659)
Genome browser
AA seq
508 aa
AA seq
DB search
MIRKLIKKLLGKDGQPRAGATGPTPPGTPVVIPVGVHGIDPSLLSKNAVRVTDTLQQAGF
KAFIVGGAVRDLLLGIAPKDFDVATSATPEQVQRLFRRARIIGRRFQIVHVQFGQEIIET
STFRALVDAVDSEQIGARRPKKGELDRKTHVTDESGRVLRDNVWGEQEEDAARRDFTVNA
MYYDPAAQTVHDYHHGWEDIQKRVLRMIGDPATRYREDPVRMLRVVRFAAKLGFKIDEAT
AAPISQLAPLIDNVPAARLFDEMLKLLLSGHAWACVQQLRAQGLHHGLLPLLDVVLEQPM
GEKFVTLALANTDARIRAGKPVSPGFLFAALLWHLVLEKWQAYQRAGEYPIPALHLAMDD
VLDAQTGKLAIQRRFVADMKEIWGLQVRLDKRVGRTPLRLLEHPRLRAGYDFLLLRCESG
EVPAEAGQWWTDFLEGDAAARDALLAQGSAPSGTPAAKRRRRRRKPTGGRGGEGSGNEAS
AGDGNENATSENHGKRVSSRQHGSEGAS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcaaactcatcaagaagctgctgggcaaggacggtcagccccgcgccggcgct
accggcccgacgccgcccggcacccccgtcgtcattcccgttggcgttcacggcatcgat
ccctcgctgctttcgaagaacgccgtgcgcgtgaccgacacgttgcagcaggccggcttc
aaggccttcatcgtgggcggtgcggtgcgcgacctgttgctcggtatcgcgccgaaggac
ttcgacgtcgccacgagcgctacgcccgagcaggtgcagcgtctgttccgccgcgcccgc
atcatcggccgccggttccagatcgtgcacgtgcagttcggtcaggagatcatcgagacc
tcgacgttccgcgcgttggtcgacgccgtcgacagcgagcagatcggtgcacgccgtccg
aaaaagggcgaactcgatcgcaagacgcacgtgaccgacgaatcgggccgcgtgctgcgc
gacaacgtctggggcgagcaggaagaagacgccgcgcggcgcgacttcaccgtcaacgcc
atgtattacgacccggccgcgcagacggtgcacgattaccatcacggctgggaagacatc
cagaagcgcgtgctgcgcatgatcggcgacccggccacgcgctatcgcgaagaccccgtg
cgcatgctgcgcgtggtgcgtttcgcggccaagctcggcttcaagatcgacgaggcgacc
gccgcgccgatctcgcagctcgcaccgctcatcgacaatgtgcccgccgcgcggctgttc
gacgagatgctcaagctgctgctctcgggccatgcctgggcgtgcgtgcagcaattgcgc
gcgcagggcctgcatcacggtctgctgccgctgctcgacgtcgtgctggagcagccgatg
ggcgagaaattcgtcacgctcgcgctcgccaacaccgacgcgcgcattcgcgccggcaag
ccggtttcgccgggcttcctgttcgccgccctgttgtggcatctcgtgctcgagaagtgg
caggcctaccagcgcgcgggcgagtacccgattccggcgctgcatctggccatggacgac
gtgctcgacgcccagaccggcaagctcgcgatccagcgccgtttcgttgccgacatgaag
gaaatctggggcctgcaggtgcgtctcgacaagcgcgtgggccgtacgccgctgcggctg
ctcgaacatccgcgcttgcgtgccggctacgacttcctgctgctgcgctgcgagtcgggc
gaggtgcccgccgaagccgggcagtggtggacggacttcctcgagggcgatgccgccgcg
cgcgacgccctgctcgcacaaggcagtgcgccgagcggtacgccggcggccaagcgtcgt
cgtcgccgtcgcaagccgacgggtggacggggcggtgaaggatcgggcaacgaagcgagc
gctggcgacggcaatgagaacgccaccagcgagaatcatggcaagcgggtatcatcgcga
cagcatggttccgaaggtgcttcatga
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