Pandoraea pnomenusa 3kgm: U875_04625
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Entry
U875_04625 CDS
T02936
Name
(GenBank) hypothetical protein
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U875_04625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_04625
Enzymes [BR:
ppk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U875_04625
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U875_04625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AHB04776
LinkDB
All DBs
Position
988151..991567
Genome browser
AA seq
1138 aa
AA seq
DB search
MLHLFFSNRFTTLEAALLRDLAQAPGQGDAAANPFDTETIVVPSVAVRRRLELDYADIFG
VCANVRLTYLAQWLWDMAGKLLTVPESSPFAPDRLVWPLYQCLAQPWVRNSPRLAGYLAG
ADDVMRFELAERLAHIYDQYLTYRPNWLERWQAGEPIDAGTAPGWGQVQRDDEAWQSALW
RKVLAHLDIRERHPTLRAIDRIEQLTPETVPHGWPRRVSVFALSSMPPLSMALLKAMSRL
IDIHLYVLNPCESYWFDIVPPSRLSYLTRRDGAAHREVGHPLLAEWGRQTQSHIDALYAD
LAPQAVEDRALFQPNPAPTLLAALQNGILTLDDGRHGTTQEVGADGSVQVHVCHSLARQI
EVLHDRLLACFDEIPDLRPDDVLITVPDLARAAPLIDAVFGTATPRIPYLVTGLPPTRTN
PVARAFASILALPQQRVAASSLVELARTEAVAQRYDLGGNVLDAIQNWLHAAGARRGWRG
DALLRLEAPRQAADGDGEMAPALERHTLGDAMMRLFLGYALPDDALPVDDWLPVGGIEGG
RAELLGQLARLIDDLDMTSVALRTERTGLEWRDQLLAMLEQFFSDETRFADDVAEVRMAI
EQIGSAIADGAPEVRVPVEVVARVLADALDDPTRGGVPSGRVTFAAIPSLRLLPYRVVCM
IGMDDGVLPGRVRADEFDLMRVLPQRGDRQRRDDERNLFLDLMLSAQDRFLITYTGRSVR
DNAPLPPSTAVDELLDFTGQLLAPVSAGYTLEAQREARDALIVLHPLQPFSPAYFDGRDA
SLFSYDVSNGDAARALADPLAVPASDVPEAPFVREALPAVAQTHLTLDDLLRFWRHPGRA
WARDRLGLSLGEMLTEVEDDEPFVLDWAGRDALASRLLPRLLRDDARDARHHAEAVERIA
RVSHELPGGATGAVWRRRELGGLRALAAQVREAQAEGTQELLVALPLTPALPPSWKASTP
AAWHGDATLSAQCLLQGRLAPVSRYGLVMYRYGSMRPSDLLAAWLAHLALCAHLQQSAHA
GLDVAPRTLWYGENETFALRPVEDAAALLAQWVALYRLGQTRPLPFFARSAWKLASTGRA
AEAESAWQGSAFARGDADDPYTRLLWRGVENPLAPPFDLLANTVFGPVVQHLEVVEGA
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgctccacctattcttttccaaccggttcaccacgctcgaagccgccttgctgcgcgat
ctcgcgcaagcgcccggccagggcgacgccgccgcgaatcccttcgacacggaaaccatc
gtcgtgccgagcgtggcggtgcggcgtcggctcgaactggactacgcggacatcttcggc
gtatgcgcgaacgtccggctgacctacctcgcccagtggctctgggacatggcgggcaag
ctgctcacggtgccggagagttcgccgttcgcgccggaccggctcgtctggccgctgtac
cagtgcctggcccagccgtgggtcaggaactcgccgcgtttggccggctatctggccggc
gccgacgatgtcatgcgcttcgaactggcggagcgtctggcgcacatctacgaccagtat
ctgacctatcggccgaactggctcgagcgttggcaggccggcgagcccatcgatgccggc
acggcgccgggctgggggcaggtgcagcgtgacgacgaagcgtggcagagcgcgttgtgg
cgaaaggtgctggcgcatctggacatccgcgagcgtcatcccacgctccgcgcgatcgac
cggatcgaacaactgacaccggaaacggtgccccatggctggcccaggcgtgtgtcggtg
ttcgcactgtcgtcgatgccgccgttgtcgatggcgctgctcaaggcgatgtctcgcctg
atcgacatccatctgtacgtcctcaatccgtgcgagagctattggttcgacatcgtcccg
ccgtcgcgcctgtcgtatctcacgcgccgcgatggcgcggcgcaccgggaggtggggcat
ccgttgctggccgagtggggtcgccagacgcagtcccacatcgacgcgctgtatgccgat
ctcgcgccacaggcggtcgaagaccgggcgctgttccaacccaatcctgccccgacgctg
ctcgccgccttgcagaacggcatcctcacgctggacgacggccgtcacggcaccacgcag
gaggtcggcgccgatggttcggtgcaggtgcatgtgtgccacagtctggcgcgccagatc
gaggtgcttcacgaccgactgcttgcctgcttcgacgaaattcccgatctgcggcccgac
gacgtgctgatcaccgtgcccgatctggcgcgcgcggcgccgctcatcgacgccgtattc
gggaccgccacgcctcgcattccctatctcgtgacgggcctgccgcccacgcgcaccaat
ccggtcgcgcgcgccttcgcttccatactggcattgccgcagcagcgggtggcggcatcg
agtctcgtggaactggcgcgcacggaagccgtggcgcaacgctatgacctcgggggcaat
gtgctcgatgccatccagaactggctgcacgccgccggcgcacgtcgcggctggcgcggc
gacgcgctgctgcggctggaggcaccgcggcaggccgcagacggcgacggggagatggcg
cccgcgctggagcgtcatacgttgggagacgccatgatgcggctgttcctcggctatgcg
ctgccggatgacgccttgccggtcgacgactggctgccggtcggcggtatcgagggcggt
cgtgccgagttgcttggccagctggcgcgtctgatcgacgatctcgacatgacgtccgtt
gcgctgcggacggagcgcacggggcttgagtggcgcgatcagttgctcgcgatgctggag
cagttcttctccgacgagacgcgcttcgccgacgacgtggccgaggtgcgcatggcaatc
gagcagatcggttcggccattgccgacggtgcaccggaggttcgcgtgccggttgaagtg
gtcgcccgcgtgctggccgacgccctcgacgatcccacgcgcggcggcgtgccctcgggg
cgcgtgacgtttgcggccatcccgagcctgcgtctcttgccgtaccgcgtggtgtgcatg
atcggcatggacgacggtgtacttcctgggcgcgtacgcgccgacgagttcgacctgatg
cgcgtgttgccgcagcgaggcgatcgtcaacgacgcgacgacgagcgcaacctcttcctc
gacctgatgctcagcgcccaggatcgttttctcatcacctacaccgggcgcagcgtgcgc
gacaacgcaccgctgccgccctcgaccgcggtcgacgaactgctcgatttcacgggacag
ttgcttgccccggtatccgcggggtacacgctcgaggcacagcgcgaggcgcgcgacgcc
ctgatcgtgctgcatccgttgcaaccgttttccccggcatatttcgacggtcgcgacgcg
tcgctcttcagctacgacgtgtccaacggcgacgccgcgcgggcgttggccgatcccctg
gccgtgcccgcatcagacgtccccgaggcgcccttcgtgcgagaagcgctgcccgccgtg
gcgcagacgcatctgacgctcgacgacctgctccgcttctggcggcatcccggccgtgcg
tgggcaagggaccgactgggactgtcgcttggggagatgctcaccgaagtggaggacgac
gagccgttcgtgctggattgggcgggccgcgatgcgctggcgtccaggctgctgccgcga
ttgctgcgcgacgatgcacgcgacgcccgccatcatgccgaagccgtcgagcgaatcgcc
cgcgtgagtcatgagttgccgggcggcgcgacaggcgcggtctggcgccggcgcgagctg
ggtggcttgcgcgcgctcgcggcgcaggtgcgcgaggcccaggccgaagggacgcaggag
ttactggtggccttgccgttgacgccggcactgccgccgtcgtggaaggcatcgacgccg
gccgcatggcacggtgacgcgaccttgtcggcgcaatgtctgttgcaaggacggctcgca
ccggtttcgcgttacgggctggtgatgtatcgctatggcagcatgcgtccaagcgatctg
ctcgccgcgtggctggcgcatcttgccttgtgtgcgcatttgcagcagagcgcgcatgcc
ggtctggatgtggcgccaagaacgttgtggtacggcgagaacgagacgttcgcccttcgt
cccgtggaagacgcggcggcgttgcttgcccaatgggtggcgttgtaccggctgggccag
acgcgcccgctaccgtttttcgcacgcagcgcgtggaagctggcgagcaccggcagggcc
gcagaggccgagagcgcctggcagggttcggcgttcgcacgcggtgatgccgacgatcct
tacacgcggctactttggcgcggcgtggagaatcccttggcgccgcccttcgatctgctt
gcgaataccgtgttcgggccggtggttcaacatctcgaagtcgtggagggcgcatga
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