Pandoraea pnomenusa 3kgm: U875_04690
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Entry
U875_04690 CDS
T02936
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U875_04690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppk03019
]
U875_04690
Enzymes [BR:
ppk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U875_04690
Messenger RNA biogenesis [BR:
ppk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U875_04690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHB04787
LinkDB
All DBs
Position
1010457..1011950
Genome browser
AA seq
497 aa
AA seq
DB search
MADVTAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRSYAGHTPLRNTVV
FGGVDMNPQKDTLRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNEIKTLASSYLTNPVTIEVARRNATADKVEQTVYEVDE
DDKRAAVVQILGERDLKQVIVFVNSKIGASRLARQLERDGIVTAAIHGDKSQNERMLALE
AFKQGGIRALVATDVAARGLDISDLPGVINYDLPYNAEDYVHRIGRTGRAGASGEAISLC
APDERKQLVEIEKLIKRELKRGQLTLERRSRSRDDRGDRYERSDRGERTERTERHSRHEG
LRVGRSGGSGAPRRVRPEDEFFYKPYEPSPSASDAQRDSNRAAQEAGAPTAFGALPEKAP
KRQVAALLAGFPRKAGN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaactgctgttccaacccccggcttcgatagcttcgggctgcatgcggac
atcttgcgggccattgccgagcagggctacacccagccgacgccgatccaggcgcaggcc
atcccggtggtgctgtccggtcgtgacgtcatgggtgccgcgcagacggggactggcaag
accgcgagtttctccctgccgatcatccagcggctgctccctgacgcgaacacgagtgca
tcgcccgcccgccatccggtgcgcgcgctgatcctcacgccgacgcgcgaactcgccgat
caggtggccgacaacgtgcgctcgtacgcggggcacacgccgctgcgcaacaccgtggtg
ttcggcggcgtcgacatgaacccgcagaaggacacattgcgccgcggtgtggaaatcctg
atcgccacgccgggacgcctgctcgatcacgtcgagcaaaagacggtcaacctcagccag
gtcaagatgctcgtgctcgacgaagccgaccgcatgctcgacatgggcttcctgccggac
ctgcaacgcattctgaacctgctgcccaagcagcgtcagacgctgctgttctcggcgacg
ttctcgaacgagatcaagacgctcgcatcgagctatctcacgaatccggtcacgatcgaa
gtggcgcgtcgcaacgcgacggccgacaaggtcgagcagaccgtctatgaggtcgacgaa
gacgacaagcgtgccgccgtggtgcagatccttggcgagcgcgacctcaagcaggtcatc
gtgttcgtcaacagcaagatcggcgcgagccgtctggcgcgtcagctcgagcgcgatggc
atcgtgacggccgccattcacggcgacaagtcgcaaaacgagcgcatgctggcactcgag
gccttcaagcagggcggtatccgcgcactggtcgccaccgacgtggccgcacgcggtctc
gatatttccgatctgcctggggtgatcaactacgatctgccttacaacgccgaggactac
gtgcaccggattggccgcacgggccgtgcgggggcgtcgggcgaagcgatttcgctgtgc
gcgccggacgagcgcaagcagctcgtggaaatcgaaaagctgatcaagcgcgagctcaag
cgcggccaactgacactggagcgccgcagccgttcgcgcgacgaccgaggcgatcgctac
gagcgcagcgaccggggcgagcgcactgagcgcaccgagcgccacagccgtcatgaaggc
ttgcgtgttggccgcagtggtggcagcggcgcgccgcgtcgtgtgcgcccggaggacgaa
ttcttctacaagccgtacgagccgtcgccgagcgcatcggacgcgcaacgcgacagcaac
cgtgccgcacaagaggccggcgctccgacggcattcggcgcgctgccggaaaaggcaccg
aagcggcaggtcgccgccctgcttgcggggttcccccgcaaggcaggcaactga
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