Pandoraea pnomenusa 3kgm: U875_04720
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Entry
U875_04720 CDS
T02936
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U875_04720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppk03019
]
U875_04720
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_04720
Enzymes [BR:
ppk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U875_04720
Messenger RNA biogenesis [BR:
ppk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U875_04720
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U875_04720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
NepR
Motif
Other DBs
NCBI-ProteinID:
AHB04793
LinkDB
All DBs
Position
complement(1019940..1021748)
Genome browser
AA seq
602 aa
AA seq
DB search
MASALEVLRTVFGYNAFRGDQAAIVDHVADGGDALVLMPTGGGKSLCYQIPALLRPGIGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLGFDEALDTERRAARGELDLLYVAPERLLTE
RFLDLLDRLDERGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPRVPRIALTATAD
AATRDEIQTRLGLTEARLFVSSFDRPNIRYEIVDRDNPRKQLLAFLGRHRGEAGIVYCLS
RKKVEETAAWLETQGIPALPYHAGLDAEVRRTHQQRFLREEGLVMAATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMTYGLNDVVVHRSRIDESNAPELQKRIE
RQKLDALLGYCEAPRCRRTVLLSYFGETSEPCGNCDVCLNPPEVFDGTVAAQKALSAILR
TGQRFGAGHLIDLLRGRSTDKIRMFGHESLPTFGVGGELDDQGWRAVFRQLIAHGLIEPD
SSQYGALTLNAAAKPVLKGETTLMLRRQRAAVGKKGRFAGYASAPAIELDVADQKLFETL
RAWRQDMAKTQQVPAYVILHDRTLRELAQRRPRHREGLADITGLGEAKIERYGEALVELL
NA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgcactcgaagtcctccgtaccgtattcggctataacgcattccgtggcgat
caggccgccatcgtcgaccatgtggccgacgggggcgatgcgctcgtcctgatgcccacc
ggcggcggcaagtcgctgtgctatcagatcccggcactgctgcgccccggtatcggcatc
gtcgtctcgccgctcatcgcactcatgcaggatcaggtcgatgcgttgctgcaagccggg
gtgcgcgccgcctatctgaattccagcctcggcttcgacgaagcgctcgataccgagcgc
cgcgccgcacgcggcgagctcgatctgctgtacgtcgcgcccgagcgcctgctgaccgag
cgctttctcgatctgctcgaccggctcgacgagcgcgggcaactggcgctgttcgccatc
gacgaagcgcattgcgtctcgcaatggggccacgacttccgcccggagtacatccagctc
tccgcactgcacgaacgctatccgcgcgtgccgcgcatcgcgctgaccgccactgcggat
gccgcgacgcgcgacgagatccagacccgcctgggactgaccgaggcgcgccttttcgtc
tccagcttcgatcggccgaacatccggtatgagatcgtcgatcgcgacaatccccgcaag
cagttgctcgcctttctcgggcggcatcgcggcgaggccggcatcgtctactgtctgtcg
cgcaagaaggtggaggagacggcagcctggctcgagactcagggtattccggccctgccg
tatcacgcggggctcgatgccgaggtccgacgcacgcaccagcagcggttcctgcgcgag
gaagggctggtcatggcggccacggtcgccttcggcatgggcatcgacaagccggacgtg
cgcttcgtcgcgcatctggatctgcccaagagtctcgaagcgtactatcaggagacggga
cgcgcgggccgggacggcgagccggccgaagcctggatgacatacgggctgaacgacgtg
gtggtccatcgcagccgcatcgacgagtcgaatgcgcccgagctgcagaagcgcatcgag
cggcaaaagctcgacgccctgcttggctattgcgaggcgccgcgttgccgacgcaccgtg
ctgttgtcatatttcggcgagacgagcgagccttgcggcaactgcgacgtctgcctgaac
ccgcccgaagtcttcgacgggaccgtcgccgctcaaaaggccctctcggcgattctccgc
acgggccagcgtttcggcgccggtcacctcatcgatctgctgcgcgggcgcagtaccgac
aaaatccgcatgttcggtcatgagtcgctgccgacattcggcgtgggcggtgaactcgac
gatcagggttggcgcgccgtcttccgccaactgatcgcccacggcctgatcgagccggac
agcagccagtacggtgcgctcacgctcaacgcggcggccaagccggtgctcaagggagaa
acgacgctgatgctgcgacgtcagcgcgccgccgtgggcaagaaggggcggtttgccggt
tacgcctcggcgccggcaatcgagctcgacgttgccgatcagaaactgttcgaaacgctg
cgcgcctggcggcaggacatggccaagacacagcaggtgccggcttacgttatcctgcat
gaccgcaccctgcgcgaactcgcacagcgccgtccgcgacatcgtgaagggctggccgat
attaccggtctcggcgaagcgaaaatcgagcgctatggcgaagccctcgtcgagctgctc
aatgcctag
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