Pandoraea pnomenusa 3kgm: U875_07965
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Entry
U875_07965 CDS
T02936
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03030
DNA replication
ppk03410
Base excision repair
ppk03420
Nucleotide excision repair
ppk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U875_07965
03410 Base excision repair
U875_07965
03420 Nucleotide excision repair
U875_07965
03440 Homologous recombination
U875_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppk03032
]
U875_07965
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_07965
Enzymes [BR:
ppk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U875_07965
DNA replication proteins [BR:
ppk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U875_07965
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
U875_07965
NER (nucleotide excision repair)
GGR (global genome repair) factors
U875_07965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AHB05336
LinkDB
All DBs
Position
1734653..1737391
Genome browser
AA seq
912 aa
AA seq
DB search
MSEQQSLEGKTLLLVDGSSYLYRAYHALPDLRGPNGEPTGALHGIVNMLRRMRKDVHAEY
SACVFDAKGKTFRDDWYPEYKAHRPAMPDDLRAQIEPIHEAVRAMGWPLLMIDGVEADDV
IGTLARQAVARGMRVVVSTGDKDLAQLVNENVTLVNTMTNETLDIAAVTAKFGVPPERIV
DYLTLVGDTVDNVPGVEKCGPKTAVKWLTQYGDLDNLVANAEQVKGAVGENLRRALDWLP
MGRKLVTVAVDCDLAPQVTSIEASLQTQPEDAETLRDFFARHGFKTLLREAQTAVAVQAG
EAAPAPVADTIERAYDAVLTWAQFDAWLKIIEAAELTAFDTETTSLDAMQAQLVGLSFSC
EPGRAAYIPVAHRAPGEVEQLPRDEVLARLKHWLESPDHKKVGQNLKYDAHVLENYGIEL
GGIAHDTLLESYVLESHRNHDMDSLASRHLGVTTVKYEDVCGKGAKQIGFDEVSVERATE
YAAEDADITLRLHRALYPDVAREATLEFVYANIEMPTARVLQRMERNGVLVDTARLAAQS
DEIGRKLIALEAEAFTLAGQQFNLNSPKQIGDIFFTQLQLPVVKKTASGAPSTDEEVLQK
LAEDYPLPKVLLEYRGLAKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAITGRLASNDPNL
QNIPVRTPEGRRIREAFVAPPGSQLVSADYSQIELRIMAHISGDESLLRAFANGEDIHRA
TAAEIFAVTPLEVSSEQRRYAKVINFGLIYGMSAFGLAANLGIERDAAKQYIDRYFMRYP
GVARYMDETRKSAKARGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADFI
KLSMIAVQRWLDDSGMQTRQIMQVHDELVLEVPDHELAEVRKRLPELMCGVAKLRVPLVA
EVGVGENWEQAH
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacagcaaagtctggaaggtaagacgctcttattggtcgatggttcgagttat
ctgtatcgagcctatcacgccctgccggatttgcgcggccccaacggtgaacccaccggg
gcccttcacggcatcgtcaacatgctgcgccgcatgcgtaaagacgtacacgcagagtat
agcgcctgcgttttcgacgccaagggcaaaacgtttcgcgacgattggtaccccgaatac
aaggcgcatcgaccggcgatgcccgacgatctgcgtgcgcagatcgagcccattcacgag
gccgtgcgcgccatgggctggccgctgctgatgatcgacggcgtggaagccgatgacgtc
atcggcaccctggccaggcaggccgtcgcgcgcggcatgcgcgtggtcgtctcgaccggc
gacaaggatctggcgcagctcgtcaacgagaacgtgacgctcgtgaacacgatgaccaac
gagacgctggacatcgccgccgtgaccgcgaagttcggcgtgccgcccgagcgcatcgtc
gactacctgaccctcgtgggcgataccgtggacaacgtgccgggggtcgagaagtgcggc
cccaagacggccgtcaaatggctcacgcagtacggcgatctcgacaacctcgtggccaat
gcggagcaggtcaagggcgcggtcggcgagaacttgcgccgcgcgctggactggctgccg
atgggccgcaagctcgtgacggtcgcggtcgattgcgatctcgcccctcaggtcacctcc
atcgaagccagcctccagacccagcccgaagatgccgagacgttgcgcgacttcttcgcg
cgccacggcttcaagacattgctgcgtgaagcgcagaccgcggtagcggtccaggccggc
gaggcggcaccggcgccggtggccgacaccatcgaacgagcatacgacgccgtgctcacg
tgggcgcagttcgacgcgtggctcaagatcatcgaggccgccgaactcacggcattcgac
accgagacgacgtcgctcgacgcgatgcaggcgcagctcgtcggcctgtcgttctcatgc
gagccgggacgcgcagcatacattcccgttgcccaccgcgcgccgggcgaagtcgagcaa
ttgccgcgcgatgaagtgctcgcgcgcctgaagcactggctggaaagtccggaccacaag
aaggtcgggcagaacctgaagtatgacgcgcacgtgctggagaattacggcatcgagttg
ggcggtatcgcccacgacacgctgctcgagtcgtacgtgctcgagtcgcatcgcaatcac
gacatggacagcctcgcgtcgcgccatctgggtgtgacgacggtgaagtacgaggacgtg
tgcggcaagggcgccaagcagatcgggttcgacgaagtgagtgtcgagcgcgcgaccgag
tacgccgccgaggacgccgacatcacgctgcgcctgcatcgcgcgctctaccccgatgtc
gcgcgcgaggccacgctcgaattcgtctacgccaatatcgagatgcccaccgcgcgcgtg
ctccagcgcatggagcgcaacggcgtgctcgtcgatacggcgcgcctggccgcgcagagc
gacgaaatcggccgcaagctcatcgcgctcgaagccgaggcgttcacgctcgccgggcag
cagttcaatctgaactcgcccaagcagatcggcgacatcttcttcacgcagttgcagttg
cccgtcgtgaagaagacggcgagcggcgcgccgtcgaccgacgaagaggtgcttcagaag
ctggccgaggattacccgctgccgaaggtgctgctcgagtatcgaggtctggccaagctc
aagtcgacgtatacggacaagctgccgaggatggtcaatccgtcgactggccgggtccac
acgaactacgcgcaagccgtggcgatcaccgggcgtctggcatcgaacgatccgaacctg
cagaacattccggtgcgcacccccgagggccggcgcattcgcgaggcattcgtggcgcct
ccgggcagtcaactggtttcggccgactactcgcagatcgagctgcgcatcatggcgcac
atctcgggcgacgaaagcctgctgcgcgcgttcgccaacggcgaagacattcaccgtgcc
accgcggccgagatcttcgccgtcacgccgctggaggtatcttccgagcagcgccgctac
gccaaggtcatcaacttcggtctgatctacggcatgagcgcgtttggactggcggcgaac
ctcggtatcgagcgcgatgccgccaagcaatacatcgaccgctacttcatgcgatatccg
ggtgtggcgcgttacatggacgagacacgcaagagcgccaaggcgcgcggctacgtggag
acggtcttcgggcgccgcctgtggctgccggacatcaacggtggcaacggcccgcgccgt
caggcggccgagcgcgctgccatcaatgcgcccatgcagggaacggccgccgacttcatc
aagctgtcgatgatcgccgtgcagcgctggctggacgacagcggcatgcagacgcgtcag
atcatgcaggtgcacgacgaactggtgctcgaggtgcccgatcacgaattggcggaagtt
cgcaagcgcttgccggagctgatgtgtggcgtggcgaagctgcgcgtgccgctcgtggcc
gaagtcggcgtgggcgagaactgggagcaggcgcactga
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