Pandoraea pnomenusa 3kgm: U875_08055
Help
Entry
U875_08055 CDS
T02936
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U875_08055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppk03021
]
U875_08055
Transcription machinery [BR:
ppk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U875_08055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
SPO22
Motif
Other DBs
NCBI-ProteinID:
AHB05354
LinkDB
All DBs
Position
1756865..1758940
Genome browser
AA seq
691 aa
AA seq
DB search
MPPVQKTRGRAAKTAAPEAQGVAENTYDQPVNEDQTKVEKQKARDRRAKEKALLKDAFSS
HQPGTAEELEERRGKLKALIKLGKERGFLTFAEINDHLPDELVESEALEGVIGTFNDMGI
AVYEQAPDAETLLLNDNAPNAASDDEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVE
LLTREGEIEIAKRIEEGLKHMVQAISACPTTIAEILAMAEKVEREEMRIDEVVDGLIDPN
AEAEAAAASSDDEDFDADADAEAEEEEEEAEEEDDSNSGAGASAAQVEQLKRDSLAKFAV
IADWFGKMRRAFEKEGYQSKPYVKAGEAIQAELMTIRFTARTVERLCDTLRSQVDEVRNI
ERAILNIVVDKCGMPRADFVSRFPGNETNLDWIYTVVADNKAYSSVVERNVPAVQELQQK
LIDLQARVVLPLAELKDVNRKMSEGERRARKAKREMTEANLRLVISIAKKYTNRGLQFLD
LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKM
NRISRQILQETGVEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFI
EDTGTVAPADAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVT
RERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcccgtccaaaagacgcggggccgtgccgcgaagactgctgctccggaggcgcaa
ggcgtcgcagagaatacttacgatcaacccgtgaacgaagatcagaccaaagtggaaaag
cagaaggcgcgtgatcgccgggcaaaagagaaagcactgctcaaggacgcattttcctcg
caccagcccggtacggccgaggaacttgaggagcgtcgtggcaaactgaaggcactgatc
aagctgggcaaggagcgaggcttcttgacctttgccgagatcaatgaccacctgcccgac
gagctggtggaaagcgaggcgctcgagggcgtgatcggcacgttcaacgacatgggcatt
gctgtgtacgagcaggcgcccgatgccgaaacgctgttgctcaacgacaatgcgccgaac
gccgcgtcggacgacgaagtcgaggaagaagccgaagcggctttgtcgaccgtcgactcc
gagtttggtcgcacgaccgacccggtgcgtatgtacatgcgcgaaatggggacggtcgag
ctgctgacgcgcgaaggggagatcgagatcgccaagcgcatcgaggaagggctcaagcac
atggtgcaggccatttccgcgtgcccgacgacgatcgccgagatcctggcgatggccgag
aaggtcgagcgtgaggagatgcgcatcgacgaggtggtcgatggcctgatcgatccgaat
gcggaagccgaggcggcggccgcttcctccgacgacgaggacttcgacgccgatgccgac
gccgaggcggaagaagaggaagaagaagccgaagaggaagatgacagcaacagtggcgcg
ggtgcttcggctgcgcaggtcgagcagctcaagcgcgactcgctggccaagttcgccgtg
attgccgactggtttggcaagatgcgtcgtgcgttcgagaaggaaggctaccagtccaag
ccgtacgtgaaggctggcgaggcgatccaggccgagttgatgacgatccgctttacggcg
cgcacggtcgagcgtttgtgcgacacgcttcgttcgcaggtggacgaagtgcgcaacatc
gagcgtgcgatcctgaacatcgtggtcgacaagtgcggcatgccgcgcgcggatttcgtg
tcgcgtttcccgggcaacgaaacgaatctcgactggatttacacggtggtggccgataac
aaggcgtacagctcggtggtcgagcgcaacgtgccggccgtgcaggagcttcagcaaaag
ctgatcgacctgcaggcgcgtgtggtactgccgctggccgaattgaaggacgtgaaccgc
aagatgtcggaaggcgagcgccgtgcccgcaaggccaagcgtgagatgaccgaagccaac
ttgcgtctcgtgatttcgattgcgaagaagtacacgaaccgtggcttgcaattcctggat
ctgatccaggagggcaacatcggcctgatgaaggcggtggacaagttcgaatatcgtcgt
ggttacaagttctcgacgtacgcgacgtggtggatccgccaggccatcacgcgttcgatc
gcggaccaggcgcgtaccattcgtattccggtgcacatgatcgaaacgatcaacaagatg
aaccggatctcgcgtcagattctgcaggagaccggtgtcgagccggatccggcgacgctg
gccgagaagatggaaatgccggaggacaagatccgcaagatcatgaagatcgcgaaggag
ccgatctccatggaaacgccgatcggtgacgacgacgattcgcacttgggtgatttcatc
gaggatacgggcacggtagcgcctgctgacgccgcattgcatggtagtatgcgcgacgtc
gtgaaggacgtgctcgattcgctgacgccgcgtgaggcgaaggtgctccgcatgcgtttc
ggcatcgagatgagcacggaccacacgctcgaggaagtgggcaagcagtttgacgtgacg
cgtgagcgtattcgtcagattgaagccaaggcgctgcgcaagctgcgtcacccgagccgt
tccgacaagctcaagtcgttcctcgaaggcaattga
DBGET
integrated database retrieval system
