Pandoraea pnomenusa 3kgm: U875_08185
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Entry
U875_08185 CDS
T02936
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_08185
Enzymes [BR:
ppk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
U875_08185
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
U875_08185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
AHB05379
LinkDB
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Position
1787434..1788987
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AA seq
517 aa
AA seq
DB search
MHADTEPPTHTLRLVLGDQLHPGHRWYSRVDPAVVYVLMEVRQETDYVLHHAQKIIAIFA
AMRDFARHLRAGGHRVRYVALDHPSNRQSITENLAALADHYGARRVEWQQPDEWRLDAQL
NSWGMSQPLDWAVVDSEHFLTPRDALASLMGERKQWLMEHFYRNMRRRWHLLLDADGGPQ
GGRWNFDSDNRKRWPGTPPEPTDWRPRHDHRALWQMLQRAGVRSFGDPQADAMRWPVNRT
EALACLEAFITQALPHFGDYEDALAAGAPRLFHSLLSFALNVKMLHPLEVVRRAEAAYVA
GRAPLAAVEGFVRQIAGWREYVRGIYWAKMPDYASHNVLNHETPLPDWFWSGNTRMRCLH
LAITQSLQTAHAHHIQRLMVIGNFALLARLDPQALHRWYLGVYIDAFEWVELPNTLGMSQ
RADGGLIATKPYVSSAAYLRRMGDYCQGCAYDPTQKTGARACPFNALYWDFFDHHAPTLQ
DNPRLAIVFRQWQKMDDAQREALRAHAAKLRERLDTL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcatgccgataccgaaccaccgactcataccctgcgcctggtgctgggagaccaattg
cacccgggccatcgctggtattcccgggtggacccagcggtcgtctatgtattgatggaa
gtgcggcaggaaaccgactacgtgctgcaccatgcccagaagatcatcgccatattcgcc
gcgatgcgtgactttgcccggcacctgcgcgccggagggcaccgtgtgcgctacgtggca
ctggaccatccgagcaatcgtcaatccatcacggaaaatctggcggcactcgccgatcac
tacggcgcccgccgggtcgagtggcaacagccggacgaatggcgactggacgcgcaactc
aacagttgggggatgtctcagcccctggactgggcggtggtggacagcgaacatttcctg
acgccgcgtgacgcgcttgcctcgctcatgggcgagcgcaagcagtggttgatggagcac
ttctaccggaacatgcgccggcgctggcatttgctgctcgatgccgacggcggcccgcaa
ggcggtcggtggaatttcgactcggacaaccgcaagcgctggccgggaacgccgccagag
ccgacggactggcgcccgcgacacgatcaccgggcgctgtggcaaatgctgcagcgcgca
ggcgtgcgcagcttcggcgatcctcaggccgacgcgatgcgctggccggtcaaccgcacg
gaggcgctggcctgccttgaggctttcatcacacaggcgctgccgcacttcggcgactac
gaggatgcattggccgccggcgcgccgcgcctgttccattcgcttctgtcgttcgcgctc
aacgtcaagatgctgcatcccctggaagtggtgcggcgtgcggaggctgcctacgttgcg
ggccgggcgccgcttgccgcggtggagggcttcgttcggcagatcgcggggtggcgagaa
tacgtgcgcggcatttactgggcgaagatgcccgactacgcgtcgcacaacgtcctgaat
cacgagacccccttgccggactggttctggagcggcaacacccgcatgcgctgtctgcac
ctggccatcacgcagtccctgcaaaccgcgcatgcgcaccatatccaacggctcatggtg
atcggcaatttcgccttgctggcccgactcgacccgcaggcgctgcatcgctggtatctg
ggcgtgtacatcgacgcattcgagtgggtggagctgccgaacacacttggcatgagccag
cgcgccgatggcggactgattgccacgaaaccctatgtgagcagtgctgcctacctgcgg
cgaatgggcgattactgccagggctgcgcttacgatcccacgcaaaaaactggcgcgcgc
gcatgtccgttcaacgccctttactgggatttctttgaccaccatgcgcccacgctgcag
gacaacccgcgccttgcgatcgttttccgccagtggcaaaagatggacgacgcgcagcgc
gaggcgctacgtgcgcatgccgcgaagttgcgcgagcgactggacaccttgtaa
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