Pandoraea pnomenusa 3kgm: U875_09035
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Entry
U875_09035 CDS
T02936
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U875_09035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppk03019
]
U875_09035
03016 Transfer RNA biogenesis [BR:
ppk03016
]
U875_09035
Enzymes [BR:
ppk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U875_09035
Messenger RNA biogenesis [BR:
ppk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U875_09035
Transfer RNA biogenesis [BR:
ppk03016
]
Prokaryotic type
tRNA degradation factors
U875_09035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
DUF5813
Mt_ATP_synt
Motif
Other DBs
NCBI-ProteinID:
AHB05525
LinkDB
All DBs
Position
1977110..1979266
Genome browser
AA seq
718 aa
AA seq
DB search
MQMFNKVVKSFQWGQNTVRMETGEIARQASGAVLVDMDDTVVLATVVGAKNAKPGQDFFP
LTVDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFYNEVQVVVQVV
SLNPEVPADIPALIGASAALAISGLPFNGPVGAARVAYVDSQYVLNPSRDQIAKSKLDLV
VAGTEQAVLMVESEAQELPEDVMLGAVVFGHEQMQTAINAIHDLVRDGGKAEWDWAPATK
NEALIAQVAALAEGPLRAAYQTREKQARTQQLRAVTSDVIAKLGEAASAKGEAAPDDIDV
GNILFDLESKIVRSQILAGEPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVV
ATLGTKSDEQIIDALHGEYRDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALVA
CLPSADDFGYTVRVVSEITESNGSSSMASVCGGSLAMMDAGVPMTSPVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI
LAKMTEAQSGVRTELSEFAPRMVTIKINPEKIRDVIGKGGSVIRALTEETGTSIDISDDG
VVTIASPSAEGIAEAKRRIELITVEVEVGQVYDGTVLKLLEFGAIVSVLPGKDGLLHISE
IANERIKDINEYLKEGQSVRVKVIQQDDKGRLRLSHKALTEEEKQGGPALVKREGDAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaatgttcaataaagtcgtgaagtctttccaatggggacagaacacggttcgcatg
gagaccggtgagattgctcgccaggcctcgggcgccgtgctcgtcgacatggacgatacc
gtcgtgctcgccacggtcgttggcgccaagaatgccaagccgggtcaggatttcttcccg
ctgacggtcgactacctggaaaagacttacgccgccggcaagatcccgggtggcttcttc
aagcgtgaaggccgtccgtcggaaaacgaaacgctgacgtcgcgcctgatcgaccgtccg
atccgcccgctgttcccggaaggcttctacaacgaagttcaggtcgtggtgcaggtcgtc
tcgctgaacccggaagtgccggccgacattccggccctgatcggcgcatcggccgcactg
gccatctcgggtctgccgttcaacggcccggtcggtgccgcgcgcgtggcgtatgtcgac
agccagtacgtgctcaacccgtcgcgtgaccagatcgccaagtcgaagctcgatctggtc
gtcgccggtacggagcaagccgtgctgatggtggagtcggaagcgcaggaactgccggaa
gacgtgatgctgggcgccgtggtgttcggtcacgagcaaatgcaaacggccatcaacgcc
attcacgacctcgtgcgcgatggcggcaaggccgagtgggattgggctccggccaccaag
aacgaagccctgatcgcccaggtggccgcgctggcagaaggcccgctgcgcgccgcttac
caaacccgtgaaaagcaggcccgcacgcaacagctgcgcgccgtgaccagcgacgtcatc
gccaagctgggcgaagccgcgagcgccaagggcgaagcggcgccggacgacatcgacgtg
ggcaacatcctgttcgatctggaatcgaagatcgtgcgcagccagatcctcgcgggcgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgtccgatcacgattcgcaccggcgtg
ctgccgcgtgcgcacggctcggccctgttcacgcgtggcgaaacgcaggcgctcgtggtg
gccacgctgggcaccaagagcgacgagcagattatcgacgcgctgcatggcgaatatcgt
gatcgcttcatgctgcactacaacttcccgccgttctcgacgggcgagaccggacgtgtg
ggttcgcccaagcgtcgcgaaatcggtcacggccgtctggccaagcgcgcgctcgtggct
tgcctgccgagcgccgacgatttcggttataccgtgcgcgtcgtgtcggagatcaccgag
tcgaacggctcgtcgtcgatggcttcggtttgcggcggcagcctcgccatgatggatgcc
ggtgtgccgatgacctcgccggtcgccggtattgccatgggcctgatcctcgagggcaac
aagttcgccgtgctcaccgatattctcggcgacgaagatcacctgggcgacatggacttc
aaggtggccggcacgtcgaatggcgtgaccgcgctgcagatggacatcaagatccagggc
atcacgaaggaaattatgcaggtcgcgctggcgcaagccaaggaaggccgcctgcacatc
ctcgccaagatgaccgaagcgcagtcgggcgtgcgtacggagctgtcggaattcgcgccg
cgcatggtcacgatcaagatcaaccccgagaagatccgcgatgtgatcggcaagggtggt
tcggtgatccgcgcgctgacggaagagacgggtaccagcatcgacatttcggacgacggc
gtggtcaccattgccagcccgagcgcggaagggatcgcggaagcgaagcgtcgcatcgag
ttgatcaccgtggaagtcgaagtgggtcaggtgtacgacggtaccgtgctcaagctgctc
gagttcggcgcgatcgtgtcggtcctgccgggcaaggacggtctgctgcacatctccgaa
atcgccaacgagcgtatcaaggacatcaacgagtacctcaaggaaggccagtcggtgcgc
gtgaaggtgatccagcaggacgacaagggtcgtctgcgtctgtcgcacaaggcgctcacg
gaagaggaaaagcagggtggtcccgcgctggtcaagcgcgaaggcgacgcccagtaa
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