Pandoraea pnomenusa 3kgm: U875_10120
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Entry
U875_10120 CDS
T02936
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U875_10120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_10120
Enzymes [BR:
ppk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U875_10120
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U875_10120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
AAA_30
Cas3-like_C_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHB05683
LinkDB
All DBs
Position
complement(2192704..2196168)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSANAPARTTAPVPLVKAGQRYAFAGSHASSDALLIARYFEDNRERLPLLAVVCAHATD
ALRLQQELKWCAPELRVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEKRCDIVLVPA
TTALYRMAPASFMAAYTFFFTQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLID
LFPMGSALPYRLDLFDDTVDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDEPARTAFRGR
WREVFEGDPSRSPIYKDIGSGVPSAGIEYYLPLFFEETATLFHYLPADAQLVFVGDLDAA
ITRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFTLAKPFARLTLPTPGDGAWATAL
PPLAINRRADDPLAALRAYLARTPARVLLCADSAGRRETLLQLLHDHDLRPVSVESLEDF
LTSDARFAIGVAPLAAGFLLPTEDLAFITENELYEGLARRAGKRRQEQATSVDSMVRDLA
ELKVGDPVVHSQHGIGRYQGLVSMDLGEGETEFLHLEYSGDSKLYVPVSQLHLISRYSGA
DPDTAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGYAFQLSPRDYEKFAD
SFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVALL
APTTLLAEQHAQTFSDRFADWPVRIAELSRFKTTKEVNASVKAINEGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDMLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEALVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKSLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVSALKAGREPDLTAPLAATTEINLHVPAILPSD
FCGDVQERLSLYKRLANGTQPDAIDTIQEELVDRFGKLPQQAQALIETHRLRLLAKPLGI
LKIDASEEAIALQFEPTPAVDPMRIIELVQKHRHIKLAGQDKLRIEVKHAQLTDRVRAIK
ETLRALGSPSARAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgccaacgccccagcccgtactaccgcgcccgtgccgctcgtgaaagcggga
cagcgttacgccttcgccggatcgcacgcctcgagcgacgccctgctcatcgcccgctat
ttcgaggacaaccgcgaacgcctgccgctgctggcggtggtctgcgctcatgccaccgac
gccctgcgtctgcagcaggaactcaaatggtgcgcgcccgaactgcgcgtacgtctgctg
cccgattgggagacgctgccgtacgacacgttctcgccgcaccaggatctggtttccgag
cgcctcgccacgctgcacgatctcggggaaaagcgttgcgacatcgtgctcgtgccggcg
actacggcgctctatcgcatggccccggcgagcttcatggcggcctatacgttcttcttc
acgcagggcgagcgactcgacgaagcgcggctgaagtcgcaactcacgctcgcgggatac
gagcacgtgagtcaggtgatgcgcccgggcgaatactgcgtgcgcggtggcctgatcgac
ctcttcccgatgggctcggcactcccctaccgtctcgacctgttcgacgacaccgtcgac
agcattcgcgccttcgatcccgacacgcagcgcagcctgtatcccgtcaaggaagtccgc
ttgcttcccgggcgcgagtttccgttcgacgagccggcgcgcaccgcgtttcggggtcgc
tggcgcgaggtgttcgagggcgatccgagccgcagtccgatctacaaggacatcggcagc
ggcgtgccttccgcgggcatcgagtactacctgccgctgttcttcgaagaaacggccacc
ctctttcactatctgccggccgacgcgcagctcgtgttcgtgggcgacctcgacgcggcg
attacccgcttctggaacgacacgcgccagcgctacaacttcctgtcacacgatcgcgag
cggccggtactgccgcccgagcaactgttcctgctcgatcaggacttcttcacgctcgcc
aagcccttcgcacgcctgacgctgcccacgccgggcgacggcgcctgggccacggcactg
ccgccgctggcgatcaaccggcgcgccgacgacccgctcgccgcgctgcgcgcctacctc
gctcgcacgcctgcgcgcgtgctgctgtgcgccgactcggccggacgccgggagacgctg
ctgcaactgctgcacgaccacgatctgcgtcccgtctcggtcgaatcgctcgaagatttc
ctgacgtcggacgcccgcttcgccatcggcgtcgccccgctcgccgccggcttcctgttg
ccgaccgaggatctcgcgttcatcaccgagaacgaactttacgaaggtctcgcgcgccgc
gccggcaagcgccgtcaggaacaggcgacgtccgtcgactccatggtgcgcgatctggcc
gaactcaaggtcggcgacccggtggtgcacagccagcatggcatcggacgctaccagggc
ctcgtgagcatggacctcggcgaaggagagaccgagttcctgcatctcgagtattcgggc
gacagcaagctgtacgtgcccgtctcgcagctgcatctgatatcgcgctacagcggcgcc
gatccggacacggcaccgttgcactcgctcggctcggggcagtgggaaaaggcaaagcgc
aaggcggcacagcagattcgtgacaccgcggcagaactgctcaacctgtatgcccgtcgc
gcggcgcgctcgggctacgccttccagctctcgccgcgcgactacgagaaattcgccgac
agtttcggcttcgaggaaacgccggaccaggccgcggccatcgccgccgtgatgagcgac
atgacgagcggccgcccaatggatcgcctggtgtgcggcgacgtgggcttcggcaagacc
gaggtggccttgcgcgcggccttcatcgccgtgctcgacggcaagcaggtcgccctgctc
gcgccgaccacgctgcttgccgagcagcatgcgcagacattctccgaccgctttgccgac
tggcccgtgcgcatcgcggaactctcgcgcttcaagacgacaaaggaagtcaacgccagc
gtaaaggcgatcaacgaaggccaggtcgatatcgtgatcggcacgcacaagctgctctcg
aacgacattcagttccagcgactggggctggtcatcatcgacgaggaacaccggttcggc
gtgcgccagaaggaagcgctcaaggcgctgcgcgccgaggtcgacatgctcaccctcacc
gccacgccgatcccgcgcacgctgggcatggcgctcgagggactgcgcgacttctccgtc
atcgccacggcgccgcagaagcggctcgcgatcaagacgttcgtccgacgagaggaagat
ggcgtcattcgcgaagccatgctgcgcgagctcaaacgcggcgggcaggtgtacttcctg
cacaacgaggtggagacgatcgaaaatcgcaaggcgcagctcgaagccctcgtgccggaa
gcgcgcatcgtcgtcgcgcatggccagatgcacgagcgcgatctcgagcgcgtcatgcgc
gacttcgtgacgcaacgcgccaacgtgctgctgtgcacgaccatcatcgagaccggcatc
gacgtgccgaccgccaacacgatcctgatgcatcgcgccgacaaattcggcctcgcgcag
ctgcaccagcttcgcggacgcgtcggacgctcgcaccaccaggcctacgcctatctgctc
gtgcacgatccgaagtcgctcacgaagcaggcccagcgacgtctcgaagcgattcagcaa
atggaagagctgggtgcgggcttctacctcgccatgcacgacctggaaattcgcggcgcg
ggcgaagtgctcggcgacaagcagtccggcgagattcacgagatcggcttccaactctac
acggacatgctggccgacgccgtgagcgcgttgaaggcaggacgcgaacccgacctcacc
gcgccgctggccgccaccaccgagatcaacctgcacgtgccggccattctgccaagcgac
ttctgcggcgacgtgcaggagcgcctttcgctctacaagcggctggccaacggtacgcag
cccgacgccatcgacaccatccaggaagagctcgtcgaccgcttcggcaagctgccgcag
caggcccaggcgctcatcgagacgcaccgccttcggctgctggccaaaccgctcggcatc
ctcaagatcgatgcgagcgaggaggccatcgcgctgcaattcgagcccacgcccgccgtc
gatccgatgcgcatcatcgagctggtgcagaagcatcgccacatcaagctcgctggccag
gacaagctgcgcatcgaggtcaagcacgcgcaactgaccgatcgcgtgcgtgccatcaag
gagacgttgcgtgcgctcggatcacccagcgcgagagcggcctga
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