Pandoraea pnomenusa 3kgm: U875_14645
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Entry
U875_14645 CDS
T02936
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U875_14645 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppk03021
]
U875_14645 (rho)
03019 Messenger RNA biogenesis [BR:
ppk03019
]
U875_14645 (rho)
Transcription machinery [BR:
ppk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
U875_14645 (rho)
Messenger RNA biogenesis [BR:
ppk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U875_14645 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AHB06439
LinkDB
All DBs
Position
3167762..3169024
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSELLEMANGLEIENANRLRKQELMFAILKKRAKSGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GHPPEASKHKIMFENLTPLHPNKPLLLERDIRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAITANHPEAKLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV
QVAEMVIEKAKRLIEMKEDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPEILQKIWVLRKLIYDMDEAEAMEFLLGKIKQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaagtcccagcacgtctccgagctgcttgaaatggcgaacggt
ctcgagatcgagaacgcgaaccgccttcgcaagcaggagctgatgttcgccattctgaag
aagcgcgcaaagtccggcgaaaccatctttggcgacggtacgctcgaggtgctgccggac
ggcttcggtttcctgcgttcacccgaaacgtcgtatctcgccagcacggacgatatctat
atcagcccgtcgcagattcgtcgcttcaacctgcataccggagacacgatcgaaggcgaa
gtgcgcacgcccaaggacggcgagcgttatttcgcgctggtgaaggtcgacaaagtcaac
ggccacccgcccgaggcctcgaaacataagatcatgttcgagaacctcacgccgctgcat
ccgaacaagccgctgctgctcgagcgcgacattcgcggcgaggaaaacgtcacgggccgc
atcatcgacatgatcgccccgatcggcaagggccagcgcggcctgctggtcgcctcgccg
aagtcgggcaagacggtcatgctgcagcacatcgcgcacgccatcaccgccaatcatccg
gaagccaagcttttcgtgctgctcatcgacgagcgcccggaagaagtgacggaaatgcag
cgctcggtgcgcggggaagtgatcgcgtcgacgttcgacgaacccgccacgcgtcacgtg
caagtcgccgaaatggtgatcgagaaggccaagcgcctgatcgaaatgaaagaagacgtg
gtgattctgctggactcgatcacacgtctggctcgcgcctacaacaccgtgatcccggca
tcgggcaaggtgctcaccggcggtgtggacgccaacgccctgcagcgcccgaagcgcttc
ttcggcgcggcgcgcaacgtcgaggaaggcggctcgctcacgattatcgccacggccctg
atcgagaccggcagccgcatggacgacgtgatctatgaagaattcaagggcaccggcaac
atggaagtgcacctcgagcgccgcctcgcggaaaagcgcgtctacccggcgatcaacctg
aacaagtcgggcacgcgtcgcgaagagttgctcatcaagcccgagatcctgcagaagatc
tgggtgctgcgcaagctcatttacgacatggacgaagccgaggcaatggaattcctgctt
ggcaagatcaagcagacgaagaacaacgccgagttcttcgacctgatgcgccgcggcggc
tga
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