Pandoraea pnomenusa 3kgm: U875_15325
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Entry
U875_15325 CDS
T02936
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03410
Base excision repair
ppk03430
Mismatch repair
ppk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U875_15325
03430 Mismatch repair
U875_15325
03440 Homologous recombination
U875_15325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_15325
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
U875_15325
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
U875_15325
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U875_15325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AHB06560
LinkDB
All DBs
Position
3317893..3319596
Genome browser
AA seq
567 aa
AA seq
DB search
MTDIVTRQVDDAAAHALARDGIHPVLARLFASRGVLASEETETALARLIPPTQLKGAREA
AVFLADTIAANRRMLVVADYDCDGATACAVAVRGLRMFGAKVDYLVPNRFEYGYGLTPEI
VALAAQGRQGPPDVLITVDNGIASLDGVAAAQRLGIEVVVTDHHLPGSELPNARCIVNPN
QPGCEFPSKHLAGVGVMFYVLLALRAELRARGAFGAREQPRLDTLLDLVALGTVADVVKL
DANNRILVAQGLARMRAGRMHPGINALFRAAARNARQAGSFDLGFGLGPRLNAAGRLADM
SLGIECLLTDDDARAWTLAQELDAMNRERREIEAGMQQEALADLARFDPRSATTLCAFNE
TWHQGVIGIVAARLKEKFYRPTIVFAPGDDGQIKGSGRSIPGFHLRDALDLVTKREPGLI
AKFGGHAMAAGLSIAADALPRFQAAFEAVGQEWLDEKALSRVIETDGDIGDECFVPPFVA
ILDAQVWGQGFPPPVFSGEFDVLSQAILKDKHLKLQLGRGRMRMNAIWFNHADTLPSRAQ
FAYRLAADTFNGVSRVQMIIEHAQGQG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatcgtcacgcgtcaggtcgacgacgccgccgcgcacgccctcgcacgcgac
ggcatccacccggtcctcgcccgactgttcgcctcgcgaggcgtattggccagcgaagag
accgagaccgccctcgcccgtctgattccgcccacgcagctcaaaggcgcgcgcgaagcc
gccgtctttctcgccgacaccatcgccgcgaaccggcgcatgctcgtggtcgccgattac
gactgcgatggcgcgaccgcctgcgccgtcgccgtgcgcggcctgcgcatgttcggggcg
aaggtcgactacctcgtgccgaaccgcttcgaatacggctatggcctcacgcccgagatc
gtggcgctcgccgcgcaaggcaggcagggcccgcccgacgtgctcattaccgtcgacaac
ggcatcgccagcctcgacggcgtggcggccgcgcagcgcctcggcattgaggtcgtggtg
acggatcaccacctcccgggcagcgagttgcccaacgcccgttgcatcgtcaacccgaac
cagccgggctgcgagtttccgagcaagcatctcgcgggcgtgggcgtgatgttctacgta
ttgctcgccctgcgcgccgaactgcgcgctcggggcgctttcggcgcgcgcgagcaaccg
cgtctcgataccctgctcgatctggtggcgcttggcaccgtggccgacgtcgtgaagctc
gacgccaacaaccgcatcctggttgcgcaaggcctcgcgcgtatgcgcgcgggtcgcatg
catccgggcatcaacgcgctgtttcgcgccgcggcccgaaatgcccgccaggccggcagc
ttcgacctggggttcgggctcggtccccgcctgaatgccgcgggccgcctggccgacatg
tcgctcggcatcgaatgcctgctcaccgacgacgacgcccgcgcctggacgctcgcgcag
gaactcgacgccatgaatcgcgagcgccgcgaaatcgaagccggcatgcagcaggaagcg
ctggcggatctcgcgcgtttcgacccgcgttcggccaccacgctttgcgcgttcaacgag
acctggcaccagggcgtgatcggcatcgtcgcggcccgcctgaaggaaaagttctatcga
ccgacgatcgtgttcgcgccgggcgacgacgggcagatcaaggggtccggccgctcgatt
ccgggttttcacctgcgcgacgcgctcgatctcgtcacgaagcgcgagccgggcctgatc
gccaagttcggcggtcacgccatggcggcgggactgagtatcgccgccgacgccctgccg
cgctttcaggcggcgttcgaggcggtcggacaggaatggctcgacgagaaggcgctgtcg
cgcgtgatcgaaaccgacggcgacatcggcgacgagtgtttcgtcccgccgttcgtggcc
atcctcgatgcgcaggtctggggccaggggttcccgccgccggtcttttcaggcgagttc
gacgtgctctcgcaggccatcctcaaggacaagcacctgaagctgcaactgggtcgcggg
cgcatgcgaatgaacgccatctggttcaatcatgccgacaccctgccaagccgcgcacag
tttgcctatcgcctggcggccgacacgttcaacggcgtctcgcgcgtgcagatgatcatc
gagcacgcccagggccagggttag
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