Pandoraea pnomenusa 3kgm: U875_17730
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Entry
U875_17730 CDS
T02936
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
ppk
Pandoraea pnomenusa 3kgm
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppk03032
]
U875_17730
03036 Chromosome and associated proteins [BR:
ppk03036
]
U875_17730
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_17730
DNA replication proteins [BR:
ppk03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
U875_17730
Chromosome and associated proteins [BR:
ppk03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
U875_17730
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
U875_17730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AHB06979
LinkDB
All DBs
Position
complement(3849644..3849937)
Genome browser
AA seq
97 aa
AA seq
DB search
MTKSELVNQLAARFPQLVLKDADFAVKTILDAMADALARGHRIEIRGFGSFGLNRRPPRV
GRNPKSGEKVMVPEKFVPHFKPGKELRERVDHKASDQ
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtctgaattggtcaaccagttggcggcgcggtttccccagttggtgctcaag
gacgccgatttcgcggtgaagacgattctcgacgcgatggccgatgcgctcgcgcgcggt
catcgaatcgaaatccgcggattcggcagcttcgggctcaaccgtcggccaccgcgcgtc
ggccgcaacccgaagtcgggcgagaaggtgatggtgccggagaagttcgtgccgcacttc
aagcccggcaaggagttgcgagagcgggttgatcacaaggcgtcggaccaataa
DBGET
integrated database retrieval system
