Pandoraea pnomenusa 3kgm: U875_20945
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Entry
U875_20945 CDS
T02936
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U875_20945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_20945
Enzymes [BR:
ppk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
U875_20945
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
U875_20945
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U875_20945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AHB07521
LinkDB
All DBs
Position
complement(4565422..4566252)
Genome browser
AA seq
276 aa
AA seq
DB search
MPELPEVEVTRRGIAPHVAGTRVARIDVRNASLRWPVPDGLDARLRGETLIGVTRRGKYL
LLEYAPGWLLVHLGMTGTLRVMPEPHALPAAGVHDHIDLVFEHCALRYRDPRRFGAVLFH
PRASGDVLLHPLLASLGVEPLTDAFDGAWLHAGTRGRTVSIKQALLAGSIVVGVGNIYAS
ESLFRARIHPRMPAGKLTRPRAGKLAAAVKEVLAAAIEKGGSTLRDFVGSDGKSGYFQQE
YFVYDRAGLPCRVCGTPIRQIVQGQRSTFFCPHCQK
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactcccagaagtcgaagtcacccgccgcggtatcgcgccgcatgtggcgggc
acgcgtgtcgcacgcatcgacgtgcgcaacgcctcgctgcgctggccggtacccgacggg
ctggacgcacgcctgcgcggcgagacgctcattggcgtgacccgtcgcggcaagtacctg
ctgcttgaatatgcgcccggatggctgctcgtgcatttgggcatgaccgggacgttgcgt
gtcatgcccgagccgcacgcattgccagcggccggcgtgcacgaccacatcgatctggtc
ttcgagcactgtgcactgcgttatcgcgacccccggcgcttcggcgccgtgctgtttcat
ccgcgcgcctcgggcgatgtgcttctgcacccgctgctcgccagtctgggagtcgagccg
cttaccgacgctttcgatggcgcctggctgcatgccggcacgcgggggcgaacggtctcc
atcaagcaggcgctgctcgcgggtagcatcgtggtgggtgtgggcaacatctacgcttcg
gagagcctgtttcgcgcgcgcattcatccgcgcatgccggcgggcaagctcacgcgcccg
cgcgccgggaaactcgccgcggccgtcaaggaagtgctcgccgccgccatcgagaagggc
ggcagtaccttgcgggacttcgtcggcagcgacggcaaaagcggctatttccagcaggaa
tatttcgtctacgatcgcgccggcctgccgtgccgggtgtgcggcacgccgatccggcag
atcgtgcaggggcagcgctccacgttcttctgcccccattgccagaaatag
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