Pandoraea pnomenusa 3kgm: U875_24960
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Entry
U875_24960 CDS
T02936
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U875_24960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_24960
Enzymes [BR:
ppk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
U875_24960
DNA repair and recombination proteins [BR:
ppk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U875_24960
Prokaryotic type
U875_24960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AIM43891
LinkDB
All DBs
Position
complement(274797..275585)
Genome browser
AA seq
262 aa
AA seq
DB search
MPRATKPAAPRAVAQDSHPEAAGPLKGRIEDQFDALPRDWKTLVAPFVQSDAYAPLCRFV
DAEVAAGKTVYPADIFHALRMTSPSDVKVVILGQDPYHGDDHGIAQAHGMAFSVQRGVRV
PPSLRNMYKEIERDLGIVPPSHGNLDAWAKQGVLLLNTTLTVEAGHAASHAKPFKTGGWQ
ACTDTLLSGLATQPEPLVFMLWGSHAQAKAPLLAGHDHLLLEAPHPSPLSAHRGFLGCGH
FSAANAFLEQHGKTPIDWRLPD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgtgcgacgaaaccggcggcaccgcgcgccgtggcgcaagacagccatcccgag
gccgccgggccactgaaggggcgcatcgaggaccagttcgacgccctgccgcgcgactgg
aagacgctggtcgcgccgttcgtgcaaagcgacgcctatgcgcccctgtgccggttcgtg
gacgcggaagtcgcggcgggcaagaccgtgtatcccgcggacatctttcacgccttgcgc
atgacgtcgcccagcgacgtgaaggtcgtgatcctgggtcaggacccgtatcacggcgac
gatcacggcattgcccaggcgcacggcatggcgttttccgtgcaacgcggcgtgcgcgtg
ccgccgtcgctgcgcaatatgtacaaggaaatcgagcgggatctcggcatcgtgccccca
tcgcacggcaatctcgacgcgtgggcgaaacaaggcgtgctgctgctcaacacgaccctc
acggtggaagcgggccatgcggccagccacgcgaagccgttcaagaccggcggctggcag
gcgtgcaccgacacactgctgagcggactcgccacgcaaccggagccgctcgtcttcatg
ctctggggcagtcacgcgcaggccaaggcgccgctgctcgccggacacgaccacctgctg
ctggaagcaccgcacccgtccccgctttcggcgcaccggggctttctcggctgcggccat
ttcagcgccgccaacgccttcctcgaacaacacggcaagacgcccatcgactggcgcctg
cctgactga
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