Planococcus plakortidis: BBI15_09610
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Entry
BBI15_09610 CDS
T04812
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppla
Planococcus plakortidis
Pathway
ppla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBI15_09610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppla03019
]
BBI15_09610
03009 Ribosome biogenesis [BR:
ppla03009
]
BBI15_09610
Enzymes [BR:
ppla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBI15_09610
Messenger RNA biogenesis [BR:
ppla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBI15_09610
Ribosome biogenesis [BR:
ppla03009
]
Prokaryotic type
rRNA helicases
BBI15_09610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
PG_binding_2
UvrD-helicase
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ANU20452
UniProt:
A0A1C7EAK7
LinkDB
All DBs
Position
complement(2824696..2826141)
Genome browser
AA seq
481 aa
AA seq
DB search
MDTNQFKAYGISESIAKALEGLGYRQATEVQQQVIPAALEKYDLTVKSQTGSGKTAAFGI
PLCELVDWEENKPQALVLTPTRELADQVKEDITHIGRFKRIKAAAIYGKHPFVYQKEELK
QKCHIVVGTPGRVLDHIEKGTLKLEKIEYLVLDEADEMLNMGFIEQVESIIKQLPKQRTT
MLFSATFPEHLEKLQRDFMRSPRYIAIQAADTLEERIEHSLYIVKEQDKFQLLRDVTVVE
NPDSCIIFCRTKDQVDAVSEGLERLFYTSDQLHGGMTQEDRFGVMDDFRRGEFRYLVATD
VAARGIDIDGITHVINYDFPLEKESYVHRAGRTGRAGKSGKAISFVTPFEDKFLKETEDY
LGFEISRVERPSREQVALAKPAFEDKIESRQKPKKHKAAALNQDIMKLYFNGGKKKKLRA
VDFVGTLTSIPGITAEDIGIIKIQDTVTYIDILNGKGLHVLKAMKDKTVKGKTLKVHKAK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggacacgaaccaatttaaagcttacggcatcagcgagtcgatcgcaaaagcgctggaa
ggcctgggctaccggcaagcgacggaagtgcagcagcaagtcatcccggccgctcttgaa
aaatacgacttgaccgtcaaatcacaaaccggcagcggcaagacggccgcattcggcatt
ccattgtgtgaactcgtcgattgggaggaaaacaagccccaggcactcgtcctgaccccg
acacgtgaacttgccgaccaagtgaaagaagacatcacccacatcggccgtttcaagcgc
atcaaggcagccgcgatctacggcaagcacccttttgtctaccagaaggaagagctgaag
caaaaatgccatatcgtcgtcggaacaccggggcgcgtgctcgaccatatcgaaaaaggg
acattgaaactcgaaaaaatcgaatacctggtactcgatgaagcggacgagatgctcaat
atgggctttatcgaacaagtcgaatcgatcatcaagcagcttccgaaacaacggacgacg
atgttgttctcggcaaccttccccgagcatctggaaaagctgcaacgtgatttcatgcgc
tctccgcgctatatcgcgatccaggcagccgataccttggaagaacgcatcgagcattct
ttgtatatcgtcaaggaacaggataaattccaattgctgcgcgatgtgaccgtagtggag
aatccggacagctgcatcattttctgccggacgaaagaccaggtcgatgcagtatcggaa
gggcttgagcgtttgttctatacaagcgaccaattgcatggcggcatgacacaggaagac
cggttcggtgtcatggatgatttccggcggggcgagttccgttacctggtcgccaccgat
gtcgcggcgcgaggcatcgatattgacggtatcacccatgtcatcaattatgatttcccg
ctcgaaaaagaaagctatgtccaccgcgcagggcggacagggcgtgccggcaagagcggc
aaggcgatttcgttcgtcacaccgttcgaggataaattcctgaaagaaacggaagattat
ttagggtttgagatttcgcgtgtcgaacgcccctcgagagagcaagtcgccttggcgaaa
ccggcgtttgaagacaagatcgagagccgccagaagccgaagaaacataaagcggctgcg
ctcaaccaagacatcatgaagctgtatttcaacggaggcaagaagaaaaagctgcgcgcc
gtcgattttgtcgggactttgaccagcatccccggcatcacggcggaagatatcggcatc
attaagatccaggacactgtcacttacatcgacatcctgaacggcaaagggctccatgtc
ttgaaggcgatgaaagacaaaaccgtcaaaggcaagaccttgaaagtgcataaagcgaaa
aaatga
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