Pleuronectes platessa (European plaice): 128424637
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Entry
128424637 CDS
T09923
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128424637 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pplt03041
]
128424637 (prpf4)
Spliceosome [BR:
pplt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
128424637 (prpf4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Ge1_WD40
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
128424637
NCBI-ProteinID:
XP_053266909
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Position
19:20530805..20537138
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AA seq
510 aa
AA seq
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MSDDDDIAPPVKRGRVYYGSLEEKERERLSSDMGRSNTSGSDAVKAGIEAGNINISSGET
LDMEERVSERQNDALAEFERRRRARQITVSTDDTEVKAGLRALSEPIILFGEGPADRRER
LRGVLSVVGPDALKKSRKDEERGKRTQDECQLTWYHEGSASLKDARLWLAKYSLPRAMER
LEAARAQRDVAEATMVMRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCSPIRTLRGHNTNVGAIVFRPQAGVSLELSDVSLASCAADGSVKLWNLES
DEPVADIEGHSERVSRVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLH
FHPDGSLAATGGLDSFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGYHLATGSGDNTCK
IWELRNRKCLYTVPAHQNLLSSVRYQPTDGHFLLTGAYDNTAKVWSQPGWTPLKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWVSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgatgacatcgctccgcccgtgaagaggggtcgtgtttactatggaagc
ctggaggagaaagagcgggaacggctgagctccgacatggggagaagcaacacgtcagga
agtgatgcggtgaaggcggggattgaggcgggaaacatcaacatctcatcaggagagact
ctggatatggaggagcgggtcagcgagcggcagaatgatgcgctggctgagtttgagcgg
cggcggcgtgcacgtcagatcaccgtctccaccgacgacactgaggtgaaggcgggtctc
cgggctctcagtgagccaatcatattgttcggagagggaccagctgatcgccgggaaagg
ttgcggggcgttctctctgttgttggtccagacgctctgaaaaagtccagaaaagatgaa
gaacgagggaaaagaacacaggacgagtgtcagctgacgtggtaccatgaaggctccgcc
tccctgaaggacgcccggctctggttggccaaatactctctgccccgggcaatggagcgt
ctggaggctgcgcgagctcagagggacgtggccgaggcgacgatggtgatgcgacaacaa
gagctacacaagagtctgaggaatttgaacaacttctgcagccagatcggtgacgatcga
ccaatcagcttctgccatttcagccctgactccaagatgttggccacagcctcttggagt
ggtctgtgtaagctgtggtccgtccccgactgcagcccgattcgtacactcagaggacac
aacaccaacgtcggcgccatcgtcttccgccctcaggccggagtctctctcgagctatcg
gatgtcagcttggcctcgtgtgctgctgatggctctgtgaagctgtggaacctcgagagt
gacgagcctgtggcggacatcgagggtcacagtgagcgagtgtcccgtgtggcctggcat
ccatctggaaggttcctcggaacgacgtgctatgataactcgtggcgtctctgggatctg
gaggttcaggaggaaattcttcatcaggaaggtcacagcaaaggagtccacgaccttcac
ttccaccccgacggctccctggctgctactggaggcctggattcgttcggcagggtgtgg
gaccttcggactggacgctgtgtcgttttcctcgagggtcacttgaaggagatctacagc
gtgcacttctcccccaacgggtatcacctggcaacaggaagtggtgataacacctgcaag
atttgggagctgagaaacaggaagtgcttgtacacagtccccgcccaccagaaccttctg
tcttcagtccgctaccaaccgacagacggtcacttcctgttgaccggagcgtatgacaac
acagcaaaggtttggagtcagcctggttggacgccactgaagacgctcgccgggcacgag
gggaaggtcatgggagtcgacgtgtcacctgacgggaaattgatcgcaacttgttcctat
gaccgcaccttcaaactctgggtatcggagtga
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