Pleuronectes platessa (European plaice): 128425189
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Entry
128425189 CDS
T09923
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128425189 (taf1c)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
128425189 (taf1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
128425189
NCBI-ProteinID:
XP_053267695
LinkDB
All DBs
Position
19:20320942..20326840
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AA seq
1045 aa
AA seq
DB search
MDQRFPPQLFPSFYNSGPPDSLPEHCAGNWGCYDRVRAEGGSGPVSNWTFTPGHQVRGET
WRHTEPVPVPLLPPKRTFVSHSKPPDPQDFREHMQNFFMDHSQDAFGCMGEILSENFNFQ
NRKTENLSSRLQSNQNSVNMWMVKNVLGSLDFKVCHRTYRSRSLNGLGALLSDAVHSVPP
ELLGSLLYEELTEQRERMLFSEGATGGALAFIPFSEGSSSQRGCLLYPGNQGQNQLNFHN
VELQHHRGGSSVLTPSVDDPVRFHLKGPIRQISSASLFNNCCVAVRSDHLCGVWRFSEGT
DPRLLQVVSTTEVATCVSASPHVLGEVLVASESGVVNLWAVGKGMLKVREEETNLYFNAK
SSWRWCEFSAHPRVMLYADRTGVELTDIRSSPARGHTLFRISSTSACRSGERLILSRYLG
DAHSFHHLITTQFSAYVVDERFPSVPMLKWDHMMESAPLFCHVLPGSASSGSVVGGDRTT
KVVLGSYSSQEITMLQYSGGRVEACFSRGPPQALHRPRESLKLLPVQIPHRLDTATNRLS
SPAAGLTCVQKKGAEECVCVVQLTEAGDLFYQILEPDRPDAETSRPPAAETLPPEREAAE
HLSQDSQLVVTDTSSDGEMIGPTQAAPRFVAETPEREQLSDSEDSQRGQTSRWVRQLGLN
VIVNDDPEPHPGGELDGAGTDAAEAGKEPSGAEEPLCSSTSSIPVVPPEETPDVKLSKDV
LATWKRWLQKLMKKSCGKRPHPHLLHFTNSTERLLHLPVEGGAGDPSEEERVQSLRRDLR
VCMSKRSLLLHDTVSLAAPDAVPLPNVVDTGAWKDELSQRLTLSWQGEDAWRAWWEDKLG
LNKEEKVKALRRKRRREKAVKRASSQRLELSGSFCSSVSYQDLGGFSDSCGWSSAASQGA
GSDSEGMMSQSQSELPGARSPSTMICETPVPTPATTPARGRPVDQRTPSSSCLRSLSQKP
EVTSASLKRSRRPSGDDLFTPQVRTVLKEESGLPSPRRTPRADLSREDFHWSGFSQSLSQ
GSQARPGLSQSSQASQKKKKSRMGF
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcggttccccccgcagctgttcccctcgttttacaacagcggacctccggac
agtctcccggagcactgcgctggaaactggggatgctacgaccgagtgagagctgagggc
ggctctggtcctgtctccaactggaccttcacaccgggacaccaggtcagaggggaaacg
tggcgtcacaccgagccggtaccggttcccctcctgcctccgaaaagaacgttcgtgtcg
cattcaaagcctccagatccgcaggacttcagagaacacatgcagaacttcttcatggat
cactctcaggacgccttcgggtgcatgggggagattctgagtgaaaacttcaactttcaa
aacagaaagacagagaatctgagcagtcgtttgcagagcaatcagaactctgtgaacatg
tggatggtgaagaacgtcctcggctcgctggactttaaagtatgtcaccggacgtaccgc
tcccggtcgctgaacgggctcggagcgctgctgtcggacgcggtgcattcggttcctccg
gagctgttgggttctctgctgtacgaggagctgacggagcagagagaacgtatgttgttc
tccgaaggggccacaggtggcgctctggccttcatccccttctctgaggggagcagctcc
cagcgcggctgcctcctctacccaggaaaccagggccagaaccagctcaacttccacaat
gtggagctgcagcaccacagaggaggttcctctgttctgacgcccagcgtggacgacccg
gtcaggttccatctgaaaggtccgatcaggcagatcagctccgcctcgctcttcaacaac
tgttgtgttgccgtgcggtccgatcacctgtgtggagtttggaggttcagcgaaggaacc
gatcctcgtctgcttcaggtcgtcagcaccacagaggtcgcgacctgcgtcagcgccagt
cctcatgttttaggtgaagtcctggtggcgagtgagagcggagtagtgaacctctgggct
gttggcaaagggatgctgaaggtgcgggaggaggaaaccaacctctacttcaatgccaag
tcctcgtggagatggtgcgagttctccgcccacccccgggtgatgctgtacgcagacagg
acgggggtggagctcacagacatcaggtcgagtcccgccagaggccacaccctgtttcgc
atcagcagcacctcagcgtgtcggagcggagagagactcatcctgtccagatatctggga
gacgcccactccttccaccacctcatcaccactcagttctcggcctacgtcgtggacgag
cgcttccccagcgtgcccatgctcaagtgggatcacatgatggagtccgcgcccttgttc
tgtcacgtcctccctggctccgcctcctccggttcggtagtgggcggggatagaaccacc
aaggtggtgctgggctcctacagttcccaggaaatcaccatgctgcagtactcaggcggt
cgagtcgaggcctgtttcagtcgaggtcctcctcaggctctgcacagacccagagagagt
ctgaagctcctccccgtccagatccctcaccgcctggacaccgccaccaaccgactgtcc
tcgcctgctgcaggtctgacttgtgtccagaagaaaggagcagaggagtgtgtctgtgtg
gttcagctcacagaggccggagatctcttctaccagatcctggagccggatcgtccagac
gctgagacgtctcgacctccggcggcagagacgctgcctccagagagagaagcagcagaa
catctctcacaggattctcagcttgttgtgacggacacgtcgagtgatggggagatgatc
ggacccacccaggctgcgccgaggttcgtggctgagacaccggagagggagcagctgtct
gactcggaggattcccagcggggacagaccagtcgatgggtgaggcagctggggctcaac
gtgattgttaacgatgatcctgagccgcatcccgggggcgagttggacggagcagggaca
gacgcagctgaagccggtaaagagcccagcggtgcggaggagccgctctgcagctccaca
agctcgattcccgtggttccgcctgaggagacgcctgacgtgaagctcagcaaagacgtt
ctcgccacatggaaacgctggctccagaaactgatgaagaagagctgtggaaagaggccc
cacccacatctgctacatttcacaaacagtactgagcgtctcctccacctgcccgtggag
gggggggcgggggatccttcagaggaggagcgtgtgcagagcctgaggagggatctgaga
gtctgcatgtccaagcgctcgctgctgcttcacgacaccgtgtccctcgccgctccggac
gccgtgccgctgcccaacgtggtggacaccggggcctggaaggatgagctcagccagcgc
ctcacgctctcgtggcagggcgaggacgcgtggcgggcgtggtgggaggacaagctgggg
ctcaacaaggaggagaaggtgaaggctctgaggaggaagaggaggagggagaaggcggtg
aagcgagcctccagccagcgcctggagctgtcggggagcttctgctcctccgtcagctac
caggacctggggggcttctccgactcatgtggctggtcctctgcagcgagccagggggcg
gggtcagacagcgaagggatgatgtcacagtcccagtctgagctgccgggagccaggtcc
ccctccaccatgatatgtgaaaccccagttcccacgccagccaccacacctgcgagaggc
agaccagttgaccagcggactcccagcagctcctgcctccgctccctgtcgcagaaacca
gaggtcacgtcggccagtctgaagaggagcaggcgtccatcaggggacgacctcttcact
ccacaggtgagaaccgtcctgaaggaggagagcggcctgccgtcccctcggaggacgccg
cgggcggatctgtccagggaggactttcactggtcgggtttctcccagtcgctgtcccag
ggctcccaggctcgaccggggctgtcccagtcatcgcaggcctctcagaagaagaagaag
tcacgaatgggattctga
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