Pleuronectes platessa (European plaice): 128428717
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Entry
128428717 CDS
T09923
Symbol
rtcb
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pplt03016
]
128428717 (rtcb)
Enzymes [BR:
pplt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128428717 (rtcb)
Transfer RNA biogenesis [BR:
pplt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128428717 (rtcb)
Prokaryotic type
tRNA splicing ligases
128428717 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128428717
NCBI-ProteinID:
XP_053270922
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All DBs
Position
22:18646860..18651552
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKLSSNCWRIKKGFVPNMQVEGIFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSNPDSVVSPGGVGFDI
NCGVRLLRTNLDERDVQPLKEQLAQSLFNHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYCEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDQIVVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAEVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagttacaacgatgagctgcagttcctggacaaactgtccagtaactgctgg
aggatcaagaaaggcttcgtgcccaacatgcaggtggaggggatcttctacgtcaacgac
cctctggagaaactgatgtttgaggagcttcgtaacgcctgtcgaggaggaggcttcggc
ggcttccttcctgccatgaagcagattgggaacgtggcggcgctgccggggatcatccac
aggtccatcgggctccctgacgtccactccgggtacgggtttgcgatcgggaacatggcg
gccttcgacatgagcaaccctgactctgtggtgtctccaggtggcgtcggcttcgacatc
aactgcggcgtccgtctcctgaggacgaacctggacgagcgggacgtgcagccgctgaag
gagcagctggcccagagtctgttcaaccacatcccggtcggggtcgggtccaagggcgtc
atccccatgggcgccaaggacctggaggaggccctggagatgggcgtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcactgtgaggagtacggccggatgctg
caggccgaccccaacaaggtgtcgtccaaggccaagaagagaggcctcccccagctggga
actctgggagcaggaaaccactactgtgagatccaggtggtggacgagatctacgacgac
tacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgtgtgatgatccacagc
ggcagcagaggcctgggacaccaggtggccacagatgccctggtggccatggagaaggcg
atgaagagggatcagatcgtggtgaacgaccggcagctggcgtgcgctcgcatcacgtcc
ccggaggggcaggactacctgaagggcatggctgcggcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggcgttcgccgaggtcttcaccacgacgccg
gacgacctggacatgcacgtcatctacgacgtgtctcacaacatcgccaaggtggaggag
cacatggtggacgggagacagaagacgctgctggtccaccgcaaaggatccacgcgagcg
ttccccccccaccacccgctcatcccggtcgactaccagctcacaggtcagccggtgctg
atcggagggacgatggggacctgcagctacgtcctgacggggacggagaaggggatgacg
gagacgttcggtaccacgtgtcacggagcgggtcgcgctctctctcgggcgaagtcccgc
aggaacctggacttccaggacgtcctggacaagctcgccgacaagggcatcgccatccga
gtggcttcacccaaactggtgatggaggaggctccggagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcacgacgctgggatcagtaagaaggccatcaagctgcggcccatc
gctgtgatcaaaggctga
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