Pleuronectes platessa (European plaice): 128428954
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Entry
128428954 CDS
T09923
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03013
Nucleocytoplasmic transport
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128428954 (upf2)
03015 mRNA surveillance pathway
128428954 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128428954 (upf2)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128428954 (upf2)
mRNA cycle factors
P-body specific factors
128428954 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128428954
NCBI-ProteinID:
XP_053271197
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All DBs
Position
22:17829800..17842323
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AA seq
1279 aa
AA seq
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MPAERKRSVNMDEKEVCSFTNKDKEKDRDGERRPASARDKAKDEAKMSGKKDGSKEEKRK
RLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRLQEEEEKKLQEEEVRRQREEEAA
LLKEKEEGHQLHQESWERHHCRKELRSKNQNAQEGRPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRESLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCSVHLCSLFHLRYSEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
DSHTHVSVVISFCKHCGDDIAGLMSRKVKAAAEKFSLSFPPSEIINPEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADL
LDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKSNQAKEKEEAKDGKEGKETAPTTEELELEALEALEITDEPLELEGADEVEN
EELTKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFLMFTKTDTLHCLKMLLSDFTHHHIEMACTLLETSGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPPLHEYIRKLLY
KDLSKVTTEKVLRQMRKLPWQDPDVKRYLICCMVNIWNVKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFIFFG
VNPDGSPSLLDPPEHLFRFRMCCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVE
VWTRDHPFPIDIDYMISDTLELLRPKMRISCSLEEATKQVADLEREVLVKLGLDMEKEGR
SSAMSEGEGLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDDGSENELGEREEEEEEN
TDYLTDSTKENETDEENNEVTLRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKV
HQLDVAIPLQLKSQMKKGGSGPPCIAEGDEDISDTMQFVMLTRKGNKQQYKILNVPLSSH
LAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRERRPRYQ
HPKGAPNADLIFKTGGRRR
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgtaagcgctcagtaaacatggatgaaaaggaagtttgctccttcact
aacaaggataaagagaaggacagagatggtgagaggcggccggcgtctgctcgagacaaa
gcaaaagatgaggccaaaatgagcggaaaaaaagacggcagcaaggaggagaagaggaaa
cggctggaggaggaaaagaagaagaaagaggagaaggagcgaagaaagaaagaggaggaa
aaacagaaagcggaggaggaacagaagaagaaagaggaggaagagaagagactccaggag
gaggaggagaagaaacttcaagaggaggaggtcagaagacaacgtgaggaggaggctgct
ctcctgaaggaaaaggaggaggggcatcagctgcaccaggagtcctgggagcgccatcac
tgccggaaggaactccgcagcaagaaccagaacgcccaagagggtcggcctgaagaggcc
tttttcagccgcctggactccagcctcaaaaagaacacggccttcgtcaagaagctgcgc
acactgactgaacagcagcgggaatcactctccaatgactttggctccctgaacctcagc
aagtacatcggagaggctgtgagctctgtcgtggaggccaagctgaagatctctgatgtc
ggctgctcggtccatctgtgttccctcttccacctgcgctactctgagtttgctccatta
ctgttacaggcgtggaagaggcactttgaagcaaggaaagaggaaaaggcgccaaatgtg
agcaagctgcgcacagatctgcgctttattgcagagctcacgatcgtgggcctcttcacg
gacaaagagggtctctcgctcatttatgagcagctgaagagcatcatcgggacggaccgg
gattcgcacactcacgtgtcggtggtcatcagtttctgtaagcactgtggggatgacatc
gctggtctgatgtcccgcaaggtgaaagctgctgctgagaagttcagcttgtcattcccc
ccgagtgagataatcaacccagagaaacagcagcccttccagaaccttctacgagaatac
tttacctcactcaccaaacacctgaagaaggaccaccgggagctgcagaacattgagagg
cagaacaggcgaatcctacattccaaaggggagctgagtgaggacaggcacaagcagtac
gaagagtttgccacatcctaccagaagctgctggccaacactcagtccctggctgatctc
ctcgatgagaacatgccagatctgcctcaggacaagactgtgcaggaggagcacggccct
ggcattgatatcttcacccctggtaagcctggagagtacgacctggaaggagggatctgg
gaagatgaagatgctcgtaacttctatgagaacatggtggacctgaaggccttcgtccct
gccatcctcttcaaggacaacgagaagagcaaccaggccaaagagaaggaggaggccaaa
gatgggaaagaagggaaggagacggcccccactacggaggaactggagctggaggctctg
gaagctctggagatcacggacgaacctctggaactggaaggagcagacgaggtggaaaat
gaggaactgaccaaaaagctgctggacgagcaagagcaagaggatgaggaggccaacaca
ggctcccacttgaagctcatcgtggacgccttcatccagcagctccccaactgtgtgaac
agggacctcatagataaggctgccatggacttctgcatgaacatgaacaccaaatccaac
cggaggaaactggtccgagcccttttcactgtcccccggcagaggttggatctgctccct
ttctactctcggctggtggcaactcttcacccctgcatgtccgatgtggcggaggacctg
tgctccatgttgaagggagacttcaggtttcacatccggaagaaggaccagatcaacatt
gagacaaaaaataaaacggtcagatttatcggggaactggccaaatttttgatgttcaca
aaaacggacacgcttcattgtctcaagatgctgctgtctgatttcacccatcaccacatc
gagatggcctgcactctgctggagaccagcggccgcttcctcttcagatcccctgactct
cacctgcgcaccagcgtcctgctggagcaaatgatgcgcaagaagcaggctcagcatctg
gatgcccgctacgtgaccatggtggagaacgcctactactactgcaaccccccacccatg
gagaagacggtgaagaagaagaggccgccgctgcacgagtacatccgcaagctcctctac
aaggacctgtccaaggtcaccactgagaaggtgctgaggcagatgcgcaagctgccgtgg
caggacccagatgtgaagcgctatctgatctgctgcatggtcaacatctggaacgtcaag
tacaacagcatccactgtgtggccaacctgctggccggcctggtggcctaccaggaggac
gtggggattcacgtggtggacggagtcctggaggacatccggctgggcatggaggtcaac
cagcccaagttcaaccagcggcgcatcagcagcgccaagttcctgggcgagctctacaac
taccgcatggtggagtcggccgtcatcttccgcaccctcttctccttcatcttcttcggg
gtgaatccggacggcagccccagtctcctggatcctcccgagcacctgttccgcttccgg
atgtgctgcaccctgctcgacacgtgtggccagtacttcgaccgaggctccagcaagagg
aagctggactgtttcctcatctacttccagcgatacatctggtggaagaagagcgtggag
gtctggacacgtgatcacccgttccccatcgacatcgactacatgatcagcgacacgctg
gagctgctccggcccaagatgaggatcagctgctcgctggaggaggccaccaagcaggtg
gccgacctggagagggaggtgctcgtgaaactaggtctggacatggagaaggagggtcgc
tccagcgccatgagcgaaggggaggggctagacgaggaagacgacgatggtgatgacgac
gaagagggaggagccgagaccgaggagcagtcgggcaacgagagcgagatgaacgagcag
gaggaggatgacggatccgagaacgaactcggggagagagaggaagaggaggaggagaac
acagactacctgaccgactccactaaagaaaacgagactgatgaggagaacaacgaggtg
accctccgcggcggtggactgaagcacgtggcctgtgctgaggacgaggacttcattcag
gctctggataagatgatgctggagaacctgcagcagcggagcggcgaggcggtgaaggtg
caccagctggacgtggccattcccctgcagctgaagagtcagatgaagaagggcggcagc
ggaccaccgtgcatcgcagagggagacgaggacatctcagacaccatgcagtttgtgatg
ctgacacgcaagggcaacaagcagcagtataagatcctgaacgtgccgctgtcctcccac
ctggcggcgaaccacttcaaccagcagcaggcggagcaggaggagcgcatgaggatgaag
aaactcaccctggacatcaacgagcgacaggagcaggaggactaccaggagatgatgcag
tccctggctcagcgtccggctcaggccaacacaaaccgggagcgccggcctcggtaccag
cacccgaaaggcgctcccaacgccgacctcatcttcaagacgggaggaaggagacgctga
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integrated database retrieval system
