Pleuronectes platessa (European plaice): 128429192
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Entry
128429192 CDS
T09923
Symbol
col7a1l
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
Organism
pplt
Pleuronectes platessa (European plaice)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
DUF4992
Motif
Other DBs
NCBI-GeneID:
128429192
NCBI-ProteinID:
XP_053271447
LinkDB
All DBs
Position
22:13595495..13637645
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AA seq
2983 aa
AA seq
DB search
MGCSCVWIFLLCLSLSHQRVTAQTEACRTVVQADIVFLVDTSWSVGQTGFSSVKGFISTV
VSSFRDSVVGAEGVRFGVTVFGDVPRMRIALTDYSSLEEVLRAIRDLPYDGGSRRMGSAL
QYLVDPVFSPAISRDHAPKIAVLITNGPSEDLVDATATVAADNGISLFAVGVWGADESEL
RRIVAQPHEEHLLLAADYSLLEPVLLKLSRRVCVTASEPPRPVKTSQPVEERVVGPRDLH
VSELAHSSLRLTWSQATGDVTGYRLLVTPLSSRGHLLPLQQRQIELKADVSTALVSDLTP
KTDYSFTVYAVYPDLIGDSVTITGQTTPLPQVSNFRVIEEGLFSLRLGWTPPQGKLNGFK
LFIPRANRPGFIYEQLLPGDTSSHVIDNLDEDKKYTINIYAVFPQGPGEPVSIVGKTLKL
LPVQQFLVQNATTDTVQARWTSVKGATGYRLTWASQDDHIENVNLGDNFNFYMIQGLHSG
SDYTITINPIFGDSEGPVTTTKAKTLESSTVQTLKVSAVTTSSAVISWNSVPGATGYRLT
WGPTPEFTGRDRPRQLALNGSTTDHHLKNVVHDTEYVLTLYVLFGSLVGPGISATFRTSP
LGYVSDFKVTSYTSTSIDLEWSPIVGATEYKLTWDTDDRKPHSHYLDRSVLFHRIEDLSP
QSPITITIAAVYGNSEGPELFLTQLTAAVSDSEPIPAVRKLKVGDIGVNFFTLSWSKTPG
ASGYKISWVPFLGGDEKFHLASAASTSFTIRNLRESSAYKIQVSSMVANREGSSVLVTAR
TLDLPKVNGFAALNTTDRSIVLNWTRVAGVSGYLLSWRHISVLETKSERLGPGFSSLKIN
DLLYGRTYIFTIRPLYGEVEGPISTVYQRILEPDPPVVTVQPVAATAAPHPPRITPASQA
ATGRQKPGRTTRQPIAVPPTKKKITATKPPARPKVTEAKPAQLTTVSTETSAPPQSACGK
SKADIVFLVDESSSIGANNFIKMKDFIFRVTTYFPVVGPEGTQIAVVHYSDEPRIEFGLN
AFKDRNSALRALRELRYGGGNTKTGKGISYVLQELFQEPLGMRPDAAHVLVLITDGRAQD
DVLPPSRFARALGVSVLAVGVSNADMDELIKIAAPTSYKNIFFSPTFDDFPSIEREFIKT
ICSEELLSEFKLHEESAQLDTPTEDPEEMVKPQGPCPSQCVKGQKGESGGGLGLGGLKFR
QSPGQYDPFTSSKGEMGEKGPAGTDGVPGLPGRPGRTGPPGSAGQRGSPGVPGDLGHPGP
AGLKGQRGERGEPGYVIAGMDANYVPGRKGEPGSSGPQGPPGVSGVNGATGLPGQPGPRG
SPGISVKGDPGEPGAKALRGKPGGPGDKGDPGKDGAAGLPGPIGLDGIPGLPGQKGVKGD
EGIGIQGIQGARGEQGEKGNIGFPGAVGPKGDLGEQGIQGIIGPRGKKGFKGEQGDKGDQ
GVIGPIGPKGPTGFTGPMGLKGDEGLRGAPGDPAKGILGPTGKKGARGDIGPVGLTGPQG
IKGEQGGKGDKGSPGFGIPGQQGPKGENGERGNVGLSGRSGPKGLDGFKGDKGNIGFPGN
PGEPGLRGKDGEPGTKGDQGIKGELGPPAGPGDRGIRGPLGLPGRPGDPGHKGDSGKDGL
PGTDGKRGDKGEQGKPGPPGAQLVADNNILTRVIKGEPGEPGPSGLRGEAGLPGSQVSVR
NLLNIQRGGSGRVGLDGLPGKPGAKGDQGLKGELSPKGDKGDQGRMGIAGMPGLPGTPGR
SGIDGKRGLPGNHGELGSKGDDGKTGDKGDTGANGKDGSKGEAGPPGLPGRQVLVTPEGA
TTDDVRQAFPIPMGPPGPTGSPGTKGDQGGQGLNGEKGDAGAPGKSIEMKDIEIMFEAYG
IRLPLLKALIDRLLQEGIEELLHVLGTVKSTKEKTDTHTSNVITENSSPVNFDLTGQTRS
DFDVTEDPDLDGGFPDSTSVXVTTSHTGFLPLFRSTLLLILXTLNVKQELERIETKLNGS
RWTKTVDGNNDKVSSLKINRTEVNSTYNSTTAQETVSGLPETVVEKVLLTQDDSLKKSSG
QKKKNRERGKGKGNKGRHKRQRHRLTSGEQVEEEDEEFYNAEEYDDEYEEEVSPHDSTTL
QESRDREAASTTTDPSSQPLEDVEEDEASLPSPPFTTEEPDKVPQSQLRVRRGAPWPDFT
AFMPGAPGGRNRFKEEQHHPSSGAAGFRGFNRQQENPDLHKPTRRERQERRGSEVHADMQ
GGGGKETKEEDGEEWKLEKEEEVEPDGFTETFPDPVYEEEERSGDYDWDAEEDVDRERER
EEDLERERERERLEMEREREELEKEREAELEKMERERETEEGERDLDREREEWERRRQEM
ERGRAGGYDETGQPYPYPPEYFHLKGQPGENGKPGPKGEIGELGQKGEPGTGHRGPEGQA
GPPGHKGEPGEPGPPGAQGIQGILGNAGIQGSPGHRGPPGDPGEPGRDGERGKRGKNGSP
GAPGLRGPPGSHGPLGLSGVKGEKGDSSPGEPGARGLTGFPGRRGEMGPLGVKGSPGNMG
SKGLRGSKGERGDSGLPGITGERGSVLQIQGPRGFKGVKGIPGERGPPGFDGDKGEKGED
GPPGFKGLKGDAGTKGALGRFGARGPVGQKGDPGEPGLNGVMGRSGDHGVDGAKGDKGDV
GLQGQKGDQGDSGEAGLPGANGEKGEKGFRGLPGRIGNPGLNGEKGEMGIPSAPGMPGLN
GLTGRKGDKGQGGTSGVDGKPGVKGERGVSGFAGFPGFKGSAGSPGRAGDEGPSGTPGPR
GGGGPKGERGRRGKVKPCQRGASGTPGHNGPSGIVGSTGGKGEKGDPGLSAEDVKELVTQ
EVADKCGLDYKFMVRSVDPDGTTATTESKNEPGDVVLSLSRDGEGGEEHGDRAGEVDSPA
PGILGEEGMIPNRTDSVDGATAERSQRKKRKVFGENAAADRCLEPMSEGTCSEYVLLWYF
HRRSGECRPFVHGGCGGNRNRFSTRQECQSWCGKQRTGTEPWR
NT seq
8952 nt
NT seq
+upstream
nt +downstream
nt
atgggctgctcctgtgtgtggatcttcctgctgtgcctgtctctctcccatcaaagagtc
accgcacaaactgaagcgtgcaggaccgtggtgcaggcggacatagtttttctggtggac
acctcgtggagtgtgggtcagaccggcttctccagtgttaaaggcttcatctcgaccgtg
gtctcctccttcagggacagtgtggtgggagccgagggggtccgattcggcgttactgtc
tttggggatgtcccgaggatgcggatcgctctgacagactacagttccctggaggaggtg
ctcagagccatcagggacctcccgtatgacggtggatccaggaggatgggctctgccctc
cagtatctggtcgacccggttttcagccctgccatcagtcgggatcacgctccaaagatt
gcagttttgatcacaaacggaccttcggaggacctggtggacgccacagccacagtggcg
gctgacaacggcatttctctctttgcagtaggggtctggggagcggatgaatccgagctg
aggaggattgtggcccagccccacgaggagcacctcctgctggctgctgactactccctg
ctggagccggttcttctcaaactgtcccgcagagtgtgcgtcacagcctctgagccaccg
cgtcctgtgaaaacttcccaacctgtcgaggagcgtgtggtcggccccagggacctgcat
gtcagcgagttggcccacagctccctcagactgacctggagccaggccacaggtgacgtc
accggctatcgcctcctggtcacccctctctcctccagggggcacctcctcccgctgcag
cagagacagatcgagctgaaggcagacgtgagcacagcactggtctcagatctgacccct
aaaacagactattcctttaccgtctatgccgtctaccctgacctcattggagactctgta
accatcaccggtcagacaacccctttaccccaggtgtcaaacttccgtgtcatcgaggag
ggtttgttctcgctgcgtctgggctggacgcctcctcaagggaagctcaacggattcaag
ctcttcatcccaagagccaaccgaccgggatttatttacgagcagctgcttcctggcgac
acctcctctcacgtgattgacaacctggacgaggacaagaagtacaccatcaatatctac
gctgttttcccgcagggaccaggcgagccagtttccatagtgggcaagacgttgaagctg
ttgccagttcagcagttcctggtccaaaatgccaccacagacacggtccaggcgcggtgg
acttcagtcaagggcgccacaggatatcgtctgacgtgggcttctcaagatgatcacata
gaaaacgtaaaccttggggacaattttaacttctacatgatccagggcctccactcaggc
tcggactacaccatcaccatcaaccccatctttggagacagcgagggccctgtcaccacc
accaaagccaagacattggagagcagcacagtccagaccctgaaggtgtcggctgtcacc
accagttctgccgtcatctcctggaacagcgtccccggggccacaggatacagactcacc
tggggacccactccagagtttaccgggcgggaccgccccaggcagttggctttgaatggc
agcaccacggaccaccatctgaagaacgtggtccatgatacagagtatgtcctgactctc
tacgtgctgtttggatccctggtgggacccggtatcagcgccaccttcaggacctctcct
ctgggctacgtgtccgacttcaaggtgacgtcctacaccagcacgtccatagatctggag
tggagtcccatcgtgggggccacggagtacaaactcacttgggacacagacgacaggaaa
ccgcattcccattacctggaccgcagtgttctcttccaccgcatcgaggacctgagcccg
cagtcccccatcacaatcaccatcgctgcagtgtacggcaactcggagggaccagaactc
ttcttgactcagctcacagctgctgtctcggactcagagccgatcccggcagtgaggaag
ctgaaggtcggggacattggagtgaacttcttcaccctgtcctggagcaaaacaccaggg
gcttctgggtacaaaatctcctgggtccccttcctggggggcgacgagaagttccacctg
gcatctgccgcctccaccagcttcaccatcaggaacctgcgggagagctcggcctataag
atccaggtgtcgtccatggtggccaacagggaggggagctcggttctggtcactgcgagg
accctggatcttcccaaagtgaatggcttcgctgctctgaacacgacagaccgcagcatc
gttctgaactggactcgagtcgccggtgtctcaggctaccttctctcctggaggcacatc
tcagtgttggagaccaaatccgagaggctgggccccggtttctcctcgctcaagatcaac
gacctgctctacggccggacatacatcttcaccatcagacctctgtacggagaagtggag
gggcctatcagcactgtgtatcaaaggatattggaaccagatcctccagtggtgacagtc
cagccagtggccgccacggcagctccccatcccccccgcatcacgcctgcctcacaggct
gccaccggcaggcagaagcccgggaggacgacccggcaacccatcgctgtgccacccaca
aaaaaaaaaataaccgccacaaaacctccagctcggccaaaagtcaccgaggccaaaccc
gctcaattaaccacagtcagtacggagacatcagctccaccacaatcagcatgtggtaag
agcaaagcagatatagttttcctagtggacgagtcctccagcatcggggctaacaacttc
atcaagatgaaggacttcatattccgtgtgaccacctacttccccgtggtcggtcctgag
ggaacacagatcgctgtggttcattacagcgacgagcctcgaatcgaattcggtctgaat
gccttcaaagatagaaactctgcgctccgggcactcagggaactgcgttacggaggaggc
aacaccaagacggggaaaggcatcagctacgtcctgcaggagctcttccaggagcctctg
gggatgaggccggatgcggctcatgttctggtcctgatcacagacggcagagcccaggac
gatgtgctgcctccctccagatttgcccgcgctctcggcgtcagcgtcctggcggtggga
gtttccaacgcggacatggacgagctgatcaaaatcgcagctcccaccagctacaagaac
attttcttctcgccgacgtttgacgactttccttccatcgagagggagttcatcaaaacc
atctgcagtgaggagctcctgtccgagttcaaactgcacgaggagtctgctcagctggac
acccccactgaagacccagaggagatggtcaaacctcagggtccctgcccctcccagtgt
gtgaagggccagaaaggggaatcggggggcggtttgggtctcggaggtctgaaattcagg
caaagccctggacagtacgatcctttcacttcctccaaaggagaaatgggagagaaggga
ccagcaggaacagatggtgttcctgggttgcctgggcgaccagggagaactggaccccca
ggttctgccggccagcggggctctcctggcgtcccaggtgacctgggtcatcctggaccg
gctggtttaaagggacaaagaggagagagaggagagcccggatacgttatagctggaatg
gatgcaaactacgtccctggacggaaaggagagccaggatcttcaggacctcaggggcct
cctggtgtatcaggggtcaatggggccacaggcctgcccggtcagccaggacctagaggg
tcacctggaatctctgtcaagggagatcctggagagccaggagcaaaagctttacgtggg
aaaccaggcgggccaggagacaaaggagatccaggaaaagatggtgctgcaggtttgcct
ggtcccatcggtctagatgggattccaggattaccaggtcagaaaggagtgaagggtgac
gaaggaattggtatacaaggtatccaaggtgctcgtggagagcagggagagaagggaaat
attggtttcccgggagcagtcggcccaaagggcgaccttggagaacagggcatccaggga
atcatcggacctcgggggaagaagggattcaaaggggagcagggagacaagggagatcaa
ggagtgattggaccaatcggaccaaaaggacccacaggattcactggacccatggggtta
aaaggagacgagggtctgagaggagccccgggagaccctgccaaggggatacttgggccg
actggaaagaaaggtgccaggggagacatcggcccggtcggcctcacgggcccccaggga
atcaaaggggaacaaggaggcaaaggagataaggggagtcctggttttgggattccagga
cagcagggaccaaagggagagaacggtgagaggggaaatgttggtttgtccggaagatca
ggaccaaagggattggacggctttaaaggggacaaagggaatattgggttccctggcaat
cctggagaaccaggattaagaggtaaagatggcgaacccggaaccaaaggagaccaagga
atcaagggtgaactaggtccacctgcagggcctggtgacagaggaatcaggggtccactg
gggctaccaggacgaccaggggacccaggacataaaggagatagtgggaaagatgggctg
ccaggtacagatggaaagagaggcgacaaaggcgagcaggggaaacctggacctccggga
gcacaacttgttgcagacaacaatatattgacaagagtgattaagggtgaaccaggagag
ccgggtccgtctggcctgagaggagaagcaggtctacctggatcacaggtgagtgtcaga
aacctactgaatatacagcgaggtggctctgggagagttggacttgatggtttaccaggg
aaaccaggagcgaagggggaccagggactgaagggcgagctgagtccgaaaggagacaaa
ggagaccagggccgaatgggaatcgcaggaatgcctggtttacctggaactccagggaga
tctggcatcgatgggaagcgaggcctgccaggaaaccacggagaactagggagcaaagga
gatgacggcaaaacgggcgataagggagacacaggggcaaatggtaaagacggcagcaag
ggggaggcaggacctccaggtttgcctggtagacaggtgcttgtcactccagagggcgcc
accaccgacgacgtccgccaagcctttccaatcccgatgggtcctccaggacctacgggc
tcaccaggaacaaagggtgatcagggaggacaaggcctgaacggagagaagggtgacgcc
ggagctcctggaaaatcaatagagatgaaggacattgaaatcatgtttgaagcctacggc
atacggctgcctctgctgaaggctttgatcgaccggctgctgcaggaaggaatagaggag
ctgcttcatgtgctcggcaccgtcaagagcacaaaggaaaaaacagacactcacacgtcc
aacgtcatcaccgagaacagcagtccagtgaactttgacctcacgggccagacgaggtca
gactttgatgtcactgaagacccagatttggacggagggttcccagattcaacgtcagtc
tgagtaaccacatcacacactggtttcctcccactgttcagatcgacactgttactgatc
ctctgaaccctgaacgtaaagcaggagctggagaggattgagaccaagttgaacggatcc
agatggaccaagacggtggatggaaacaatgacaaagtgtcttcactaaaaatcaatcgc
actgaagtcaattctacttataattctactacggctcaggagacggtttcaggattaccc
gaaactgtggtggagaaagttctcctcactcaggacgactccctgaagaagagttcagga
cagaagaagaagaacagggaacgtgggaagggcaaaggaaataaaggacgacataagagg
cagagacaccgcctgacaagtggcgagcaagttgaagaagaagacgaggagttttataac
gctgaagaatacgatgatgaatatgaggaagaagtttccccacacgactctaccactcta
caggagagccgagacagagaggccgcctcgacaaccacagacccctcgtctcaacccctg
gaggatgtggaggaggatgaagcgtctctgccttcgcctcccttcacgacagaagaacca
gacaaggtgcctcaatctcagctgagggtgagaagaggcgccccctggcccgatttcact
gcatttatgccaggcgcccctggtggaaggaatcgcttcaaggaggaacaacatcatccg
tcctctggagctgcaggtttccgcggcttcaataggcagcaggagaaccctgatcttcac
aaacccaccaggagggagaggcaggagagaagagggagtgaggttcatgcagatatgcaa
ggtggaggaggtaaagagactaaagaggaagatggggaagagtggaagctggaaaaagag
gaagaagtggagccggatggatttaccgaaaccttccctgatccggtttatgaggaggag
gagaggagcggagactacgactgggatgctgaggaggatgtggatcgagagagggaaaga
gaggaggacctggagagggagagagagagggagcggttggagatggagcgagagcgagag
gagctggagaaggagagggaggccgagctggagaaaatggagcgagagagggagacagag
gagggggagagagacctggacagggagagggaggagtgggagaggaggaggcaggagatg
gagagggggagagctggaggttatgatgagactggacagccttacccataccctccagag
tatttccacctgaagggacaaccaggggagaacggaaaaccaggaccaaagggcgaaatt
ggtgaattgggacaaaagggagaaccaggcaccggccacagaggacctgagggccaggct
ggtcctccgggacacaagggggagccaggtgagcctgggcctccgggtgctcagggcatc
cagggaatcctgggtaacgcaggcatccaaggctcaccgggccacaggggtccgccaggg
gatccaggggagccgggcagagacggcgagcgaggtaaaagggggaagaacggatcacct
ggagctcctggacttcgaggaccacctggctctcatggtccgcttggtttatctggagta
aaaggagaaaagggggacagtagtccaggagaaccgggtgccaggggtttgaccggtttc
ccaggcagaaggggagaaatgggtcctctgggtgttaaaggatctccgggtaatatgggt
tcgaaaggattacgaggcagcaaaggagaaaggggagatagtgggctaccgggaatcaca
ggagagcgggggagtgtgcttcagatccaaggacctcgaggatttaagggagtcaaagga
attccgggtgagcgaggtccaccgggtttcgatggcgacaaaggagaaaagggcgaagac
ggacctcctggattcaagggcttgaagggtgacgccggcaccaagggggcattgggaagg
tttggagcacgaggacctgtggggcagaagggagatccaggagagccaggactcaacgga
gtgatgggtcgcagcggggatcacggagtggacggggccaaaggggacaagggagatgtg
ggactgcaaggtcaaaagggtgatcagggcgactcaggggaagcagggttaccaggagcc
aatggggagaaaggagagaagggtttcagaggattacccggacgcatcgggaatccaggc
ctcaatggagagaagggagaaatggggatacccagcgcccctggtatgcccggactgaat
ggactcacgggtcgcaagggtgacaaagggcaagggggaaccagtggagttgatggtaaa
ccaggagtgaaaggggaaaggggtgtatcagggtttgcgggtttccccggttttaagggt
tcagcagggagtccaggcagggccggagatgaggggccatcagggaccccaggtcctcgg
gggggcggtgggcctaagggggagaggggccgaagaggaaaagtgaagccgtgtcagagg
ggagcgtcagggacaccgggacacaatggaccgagtggcatagttggaagtacaggagga
aagggggagaagggagatcctggactctcagctgaagacgtgaaggagctagtcacgcag
gaggtggcagataagtgtggactggattacaagttcatggtaaggtcagtggatccagat
ggaacaacagcaacgactgagagtaaaaacgagccgggagatgtggtgctctctctctct
cgtgacggagagggaggagaagaacatggagacagggcgggggaagtggacagtcctgcc
cctgggatccttggagaagaagggatgataccaaaccgcactgattcggttgatggagcg
acggcggagcggagccagaggaagaaaagaaaagtatttggagagaacgcagctgctgac
cgctgtctggagcccatgtcagaggggacgtgctcagagtacgtgctgctctggtacttc
caccggcgctcgggggagtgccggccatttgtgcacggcggctgcggcggcaaccgaaac
cggttctccaccaggcaggagtgtcagagctggtgtgggaagcagaggacaggcactgaa
ccctggagatga
DBGET
integrated database retrieval system
