KEGG   Pleuronectes platessa (European plaice): 128429975
Entry
128429975         CDS       T09923                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
pplt  Pleuronectes platessa (European plaice)
Pathway
pplt03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pplt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    128429975 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pplt03021]
    128429975 (taf5l)
   03036 Chromosome and associated proteins [BR:pplt03036]
    128429975 (taf5l)
Transcription machinery [BR:pplt03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     128429975 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     128429975 (taf5l)
Chromosome and associated proteins [BR:pplt03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     128429975 (taf5l)
    STAGA complex
     128429975 (taf5l)
    TFTC complex
     128429975 (taf5l)
    SAGA complex
     128429975 (taf5l)
    SLIK complex
     128429975 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_IFT122_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR41 RMC1_N Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_VPS8 Tricorn_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st PROPPIN Beta-prop_IP5PC_F WD_LRWD1 Nbas_N WD40_like PEP5_VPS11_N Beta-prop_ELP1_1st Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 128429975
NCBI-ProteinID: XP_053271863
LinkDB
Position
3:complement(1750725..1755291)
AA seq 600 aa
MKRGRTEQIQLAVAQYLKRRQYVESDGSMKGARLLQSPEEMAASLTVQTESGCSNIVSAA
PCQADPQQYEAQFSRLRSFLSETEVAWAREVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHGAFLQDSEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNGALCRALSTHLQVEVSASRRTDYELYGAASGTTAAPNPPSSWAGVDGAEGVEGVEVP
AGIPQSEVALEALQDCIKKVREGPPSLTTVCLYAFHHTEQMLNTAEVSADSRLLAAGFDS
STVKLWSLRARKLKARPHPADVSRIHLACDVLEEQVEEEDVCGSEIKTLRGHSGPVFRTC
FLTDSSGLLSCSEDTTVRYWDLDSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYSLRLYAGHLADVDCVKFHPNSSYLATGSADKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASASEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHSGTPADGSSSELVGLYTGNTSSVLKVQFMACNLLLVTGTAQEKAEP
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcggggtcgcactgagcagatccagttggctgtggctcagtacctgaagaggagg
cagtatgtggagagcgacggctccatgaagggagccagactcctccagtcgcccgaggag
atggccgccagcctcacagtgcagacggagtcgggctgttccaacatcgtctctgccgcc
ccctgccaggccgacccgcagcagtatgaggctcagttctccaggctgcgctccttcctg
tcagaaacagaagtagcctgggcgagggaggtgagcagcatcctctacccgctgttcgtc
tacctccacctggacatggtgcgctgtggcctgaagggggcagtagatgggttttacagt
cggttccatggcgcctttcttcaggacagtgaacagcgtgccaccatagagcagctccgc
catgttctcactgctcaggatgttgcagctaatcccaagctgagcgccttcctggagcac
aagtacgtggttcacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacggcgccctctgcagggccctgagcacacacctgcaggtggaggtctccgcc
tccaggcgcacagactacgagctgtatggagccgccagtgggacgactgccgccccaaac
cccccctcctcctgggcgggggtagatggggcagagggggtggagggcgtggaggtccct
gctgggatcccacagagcgaggtggccctggaggctctgcaggactgcatcaagaaggtg
cgcgagggccccccctcactcaccactgtgtgtctgtacgccttccaccacacggagcag
atgctgaacacggccgaggtgtcggcggacagccggctgctcgccgccggcttcgacagc
tccaccgtgaagctgtggagcctccgggccagaaagctgaaggccagaccgcatccggct
gacgtgtcccgcatccacctggcctgcgacgtcctggaggagcaggtggaggaggaagac
gtctgtggcagtgagatcaagactctgcgaggtcacagtggacccgtgttccggacctgc
ttcctgacggacagctccggcctgttgtcctgctccgaggacaccaccgtgcggtactgg
gacctggacagcttcaccaacacggcgctctaccagggccacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctctacttcgccagcggctcccatgaccgcaccgcccgc
ctctggaccttctcccgcacgtactcgctgcgcctctatgccggccatcttgccgacgtt
gactgtgtcaaattccacccaaactccagctacctggccaccggctccgcagacaagact
gtcaggctgtggagcacccagcagggggcgtcggttcgtctctttaccggccaccgcggc
ccggtgctgtcgctcgctttctcgccgaacgggaaatacttagcgtctgctagtgaggac
cagcgggtgaagctgtgggacttggcgtctgggacgctgttcaaagacttgcggggacac
acggacagcgtcaccagcctgtccttcagcccggacagcagcctggtggcgtcttcgtct
atggacaactccgtccgggtgtgggacattcggaactcacacagcgggacgccagccgac
ggctcgtccagcgagctggtgggactgtacactggaaacaccagcagcgtgctgaaggtc
cagttcatggcctgtaacctgctgctggtgacggggacggcacaagagaaagcagaaccg
tag

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