Pleuronectes platessa (European plaice): 128429995
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Entry
128429995 CDS
T09923
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03020
RNA polymerase
pplt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128429995 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
128429995 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128429995 (polr2a)
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128429995 (polr2a)
Enzymes [BR:
pplt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128429995 (polr2a)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128429995 (polr2a)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128429995 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128429995
NCBI-ProteinID:
XP_053271873
LinkDB
All DBs
Position
23:5448792..5461175
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVVDRTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDNT
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQNEPEEDISKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEIFILGLDPKF
SRPEWMILTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLHIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAIIKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNANVQSVLEREFEQMKDD
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINARTPTDLNPLRVVEGLQDLSKKLVI
VNGEDLLSVQAQKNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFNEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SAHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNMPGISVAGPTGMF
FGTAASPMSGMSPAMTPWNTGATPAYGAWSPGIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEETI
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccactgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggttgtccgtcacagagggggggatcaag
taccccgagaccacagaaggaggacgtcctaaacttggcggccttatggacccgagacaa
ggtgtcgtagatagaacgggaagatgtcagacatgtgcaggcaacatgacagagtgtcca
ggtcactttggacacatagaactggcaaagccagttttccatgtcggcttcgtaacaaag
atcatgaaggttctacgatgtgtgtgtttcttttgctccaagctattagtggataatacc
aacccaaagattaaagatatcctggtcaaatctaaagggcagccacgaaagcgcttgaca
catgtgtacgagctgtgcaaaggaaaaaacatctgtgaaggaggggaggagatggacaac
aaatttggaatggagcaaaatgagccagaggaggacatttctaaagagaagggtcacggt
ggctgtgggcgctaccagccacgcatcagacgctctggcctggagctgttcgctgagtgg
aagcacgttaatgaagactcgcaggagaagaaaatcctgctgaatccggagcgtgtccac
gagatcttcaagcgcatctctgatgaagagatcttcatcttgggcttggatcccaagttc
tcccgtcctgaatggatgattctgactgtgctgcctgtgcctccactggctgtgaggcct
gcagtcgtcatgcagggatctgctcgcaaccaggacgacttgacccacaagctggctgac
attgttaagatcaacaaccaactgagaagaaacgagcagagcggtgcagcggctcacgtc
atcgctgaggatgtgaagctgcttcagtttcacgtagccacaatggtggacaacgagttg
cccggcctgccgagggcaatgcaaaaatctggccgccctctcaaatcccttaagcaacgt
ttaaagggaaaggaggggcgagtccgaggtaacctaatgggaaagcgtgtggatttctcc
gctcgaactgtcatcacccccgaccccaacctgcatatcgaccaagtgggcgtaccgcgg
tccatcgcagccaacatgaccttcccggaaattgtcacaccctttaacattgacagactt
caagagctggtgcgacgaggaaacagccagtacccaggagccaaatacatcattcgtgac
aacggagacagaattgacctgcgcttccatcccaaaccaagtgaccttcatctgcagatc
ggctacaaggtggaaaggcacatgtgtgatggtgacatcatcatcttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccctggtccacgttt
cgactcaacctcagtgtcaccaccccatacaatgctgattttgacggggatgagatgaac
ctccacctacctcagtccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacacactc
acagccgtgcgcaaattcacaaagagagacgtcttcttagagaggggggaagtcatgaac
ctcctcatgttcctctccacctgggacgggaaaatgccccaaccggccatcatcaagcca
cgtcctctgtggacaggcaagcagatcttcagtctcatcattccaggacacatcaacgtc
atccgcacgcacagcacccaccccgacgaggaggacagcggtccttacaaacacatctca
ccaggggacaccaaggtcatcgtggagaatggcgagttgatcatgggcatcctgtgtaag
aagtcgctggggacatcagccggctcccttgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagactgtagtcaacaactggctgctcatc
gagggtcattccattggtatcggtgactccattgctgatgccaaaacctaccttgacatc
cagaataccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaggcccacaac
aacgagctggagccgacccctggtaacacgctgaggcagacctttgagaaccaggtcaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctcagcccagaagtccctgtctgag
tacaacaacttcaagtccatggtggtggccggctctaagggttcaaagattaacatctct
caggttatcgctgtggtggggcaacagaacgtggagggtaagagaatccccttcggcttc
aaacaccgcacgctgcctcacttcattaaagatgattacggtcctgagagtagaggcttc
gtggagaactcctacctggctggcctgacaccaaccgagttcttcttccacgccatggga
ggcagagagggtctgattgatacagctgtcaagactgctgagactggttacatccagcgg
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacggcaccgtgcgtaactcc
atcaaccaggtggtccagctgcgctacggtgaggacggcctggcaggagagaatgtcgag
ttccaaaatctggcaactctcaaaccctcacacaaggcctttgaaaagaagttcagattt
gactgcactaatgagcgcgcactgaggcggatgctgcaggaggacgtggtcaaagacgtc
ctgaccaacgccaatgtgcaaagtgtcctggagagagagtttgagcaaatgaaggatgac
cgggagatccttcgggccattttccccacaggggacagcaaggtggtgctaccatgcaac
ctggccagaatgatctggaatgctcagaagatcttccgcatcaacgctcggaccccaaca
gacctcaatcctctcagagtggtcgagggtcttcaagatcttagcaagaagctggtgatt
gtgaacggggaggacctgctgagcgtgcaggcccagaagaacgccactctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacggaggagttccgcctttccacc
gaggctttcgactggctgctgggagagattgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggtcggcgctctggctgctcagtcgctgggagaaccagctactcagatg
accctgaacactttccactacgccggtgtgtccgccaagaacgtaacactcggtgtgcct
cgtctcaaggagttgatcaacatctccaagaggcccaagacgccctcgctcaccgtcttc
ctgctgggtcaggctgcacgtgacgctgagagggccaaggacatcctctgccgactggag
cacaccacactccgaaaggtgacagccaacactgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactatgaaatgcccgacttt
gacgtgacacgcatttcgccatggctgctccgtatcgagctggaccgcaagcacatgact
gatcgcaaactaacaatggagcagatcgcagagaagatcaatgcaggttttggagatgat
ctgaactgcatcttcaatgacgacaatgctgagaagctcgttctgcgaatcagaatcatg
aacagcgacgagaacaagttcaacgaggatgaggaggtggtggacaaaatggacgacgac
gtgttcttgagatgcatcgagtccaacatgctgacggatatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcataatc
accgaggaaggtgagttcaaggccctgcaggagtggatcctggagacggacggagtgagt
ctcatgagagtcctgagcgagaaggacgtggatcccgtccgaaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggctgtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggctcctacgtcaactaccgtcacttggctctgctctgt
gacaccatgaccagccgcggtcacctgatggccatcacgcgtcacggcatcaaccgtcaa
gacacgggaccgcttatgaagtgttcctttgaagagacggtggatgtgttgatggaggca
tcggcacacggtgaatgtgaccccatgaagggcgtgtcagagaacatcatgctgggccag
ctcgccccggctggcaccggctgctttgatttgctgttggatgctgagaagtgcaaatac
gggatggagattcccacaaacatgccgggtatcagcgtggctggacccactggaatgttc
tttggcacagcggcgagtcccatgagtggcatgtcacccgccatgacaccgtggaacacc
ggggccacaccagcctacggcgcctggtctcctggtattggaagcggcatgactcctggt
gcagccggtttctctcccagcgcagcatctgacgcaagtggcttctctcccggctactcc
ccggcctggtccccgactcctggctccccaggttctccaggacctgccagcccgtacatc
ccatctccaggtggagccatgtcaccaaactactcgcccacctcaccggcctacgagccg
cggtcccctggtggctacaccccacagagcccaggctactctccaacatccccctcctac
tcccccacctctccctcttactcccccaccagccccaactacagcccgacctctccttcc
tactcccctacttcgcccagttactccccaacttctccctcctattcgcccacatctccc
tcctattcgcccacctctccatcttactcccccacctctccatcttactcccccacctcc
ccgtcctactctcccacctcgccaagctacagcccgacatcgccgagttacagcccgaca
tcgcccagctactctcccacctcgccctcttactcgcccacttcaccgtcatactctccc
acctccccctcttactctcccacctccccctcctactctccaacctctccctcctactcg
ccaaccagcccgagctacagccccacatcaccaaactacactcccacctctcccagttac
tcccccacatccccctcctactccccgacgtcgccctcttactctcccacctcccccaac
tacaccccgaccagccccaactactctcccacctctccctcgtactcgccaacctctccc
tcatactctccttccagtccgcgctttactccgcagtcacccacctacacacccagctcg
ccctcatacagccccagctcgccctcctactcccccacctcccccaaatacaccccgact
tccccctcatacagccccagctccccggagtacactcccacctctcccaagtactcccct
acttctccaaagtactccccaacatctccgaagtattcccctacctctcccacctactcc
ccaacgacgccgaaatacagccccacctctcctacctactctccgacctctcccacctac
acccccaccagccccaaatactccccgacctccccgacttactccccgacctcacccaag
tattcacccacgtctcctacgtactcgccaactagtcctaaaggctccacctacagcccc
acctcccctggatacagccccacctcacccacctacagcccggccatcagccccgacgac
agcgacgaggagaccatctga
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integrated database retrieval system
