Pleuronectes platessa (European plaice): 128430050
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Entry
128430050 CDS
T09923
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128430050 (focad)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128430050 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
128430050
NCBI-ProteinID:
XP_053271956
LinkDB
All DBs
Position
23:complement(14358941..14397853)
Genome browser
AA seq
1807 aa
AA seq
DB search
MEGLKIRFDFPSPVVQAQAVRNLVAAVLKEKGQNGQITQSSPQGPALEALWQQCCSDCAL
VRSSCCDAVVLLVDQGHADLHYILNCVLNLLPSARNVQGLIKVIGQLLQMQADQRDRESH
FACPYSIRNSPHPYITALENRVDCWPVLLLEMDDFIQQAADRKEPAHITMLAPFLQYLYC
EPQQQPQHALLRHSLLRVLLPVHPGAASALQAKDEEKPCAVSDSLLHLLCQLVPRMQVNS
VEAVLELCGFINALLQVLLRAPEEQWRSERARLLLQLLCACQRCLRLNRDCRPLLKLLLQ
LLPACQQELPVDELMIGVALLLLEAPAAQQTSLLTLALSLAPEHAELSPWLSPVLVLPVL
QLLSCAELTEPMADRRTHKLNHSLAHSLLRIVSKQTDKPRQPCPPLVLPLSSWYSELSVA
LSILRKVADDPALATEWLLSVRSAVSSSQRLPCSLTLIVTYLIIMGREDVCQLALDASQA
FAAADPCQVPSLIPVLLFKLGKDKNPNVAHAVLNCLPNLGTHKLCVPMVLQTLHMLASAP
KLRAVAMRLMTALWKKQDRVYPELQRLLGQQDSRVVVGRDAQWEQILARAACLRDICRER
PYQHGGDMLAAITLTLNQCTRPDMATPAALALQGLQELCRAEVVDIISTWRRLGPELSCE
SRPLMVKAVAELLALVPQLTVKSEEYEKLKVEVVSFLWNYAVSKDPEVASCGYKALAEFP
EAAHTITLLPEAARPATKLPEKEEEDKGEEKEEEEKDLSIPGSSYVKLMALTPVSVLPAF
EFFLTSLVKQEMSRMPRGVYFSALRGGNLRSDQGKTVAGIPAFMLKTYEKNKQPGLKPGL
AAGLLLSYELPVQTDRTGKPIDRFLISRCRSFQQTLTALIHEVNIQPSEWHRSLLLPQAW
RGFMSRAFHAVLQGRRADMEMQQKQGKENPEELQYKQHCAWLWARDQLTDVIKVATKDSP
VVQGNSILALSGLASVLAKYESNLPVDSDGSLGAGPEFVPTASWLSMVLETLLSIISSSY
RARGQVFPWFMHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLVKVLTALKAGLP
GSTTADDSQAVQFHSGLALGMVLTSLHHQRLGDVSVQKDTDLLLSSLDALKGCSFNSDLE
YNTGCMLGLGLVLAALCSSGQKEQHVHVTQTLDKLLSDLQDSSGQGRMLQEVLAYAVACV
GVSAFSGGLIDAAKAEEVMNTVRTLTEESQQTPGFSLALGLVVHGLSLSGHGKAVDIHPR
LLAAWIKILLAEGCPTMQRLAAVNGLVALVGSESYLIQLKSELELSSQQQSRLNEVIRAI
TQILTFSGAIGLQSNSACLVGHLHLAHMSTSHSHTAVPQDFSYLPEKSVIRSIIDFVSEA
GKKGPEFSPLALVKTALTSLASVGASFQYPPINWSAVLSPLMRLSFGEDVQHQCVVLAAC
QAQSSQSASLFLGSWLSPPLVHSLSHQTRAHLFETLGMWMKHVAEDKLQIFVESLGLQQF
QEDLRPQRLSLCRSLLQGLAKAMALPNPPSNCWAILCSTTEKIFSLLPNEIQDDEVDLYM
GVAKCLSEMSDTEIDRIAKVTEGQMEKTCFVLAYLTSQGRVPLLGLNDIIAGVLRGWPSR
RVGWLLLQTFYQCRLASGSNTGVSKRMEWLLELMGHIRNVAYGVTSVSCGDSRMATDFLF
QVFAAAVVSWGDHFMPLLLGIRAQWFPWQLGSKPRALHHSLYGQESLTDHALPQCLLGVS
HSLALLLDKEPWSSQTQKFIDWLLSITEGPEQSLSTETINTAKAALLALKSSAEFEKKTV
WTRAYGW
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagggtctgaagatacggtttgattttcccagccccgtcgtacaagcacaggcggtg
agaaatcttgttgctgctgtgctgaaggagaaagggcaaaatgggcaaatcacacagtca
tcccctcagggcccggcgctggaggctctgtggcagcagtgctgcagtgactgtgctctg
gtgcggtcgtcctgctgtgatgccgtggtgctgctggtggaccagggccacgcagacctg
cactacatcctcaactgtgtcctcaacctcctgccctctgccagaaatgtccaggggctt
ataaaggtcattggacagctgctacagatgcaagcagaccagagagaccgagaatcccac
ttcgcctgtccttactccatcaggaacagccctcacccgtacatcacagccctggagaac
cgagtggactgctggccagtgctgctgctggagatggatgatttcattcagcaggctgct
gacagaaaggaaccagcccacattaccatgctggcccccttcctgcagtatctgtactgt
gaacctcagcagcaaccccagcatgccctcctccgacacagtctcctgcgggtgctgctg
cccgtacatccaggagctgcatcggccctccaggcgaaggacgaggagaagccctgcgcg
gtgtccgacagcctgctgcacctcctctgccagctggttccacgtatgcaggtaaacagc
gtggaggcggtgctggagctgtgtggattcatcaacgctctgcttcaggttctccttcgg
gccccggaggagcagtggagatctgagagagcccggttgcttctgcagctgctgtgtgcc
tgtcagcgctgcctcaggttaaacagagactgtcggccgcttctcaagctgctgctgcag
ctcctgcccgcctgccaacaggagctgccagtggatgagctgatgattggtgtggccctg
ctcctgctcgaggcccctgcagctcagcagaccagcctgctcactctggcactaagtttg
gctcctgagcacgctgagctgtcgccctggttgagtccagtcctggttcttcctgtgctg
cagctgctgtcctgtgcagaactcactgagcccatggctgaccggaggacacacaaactc
aaccacagcctggcacacagcctgctccgcatcgtcagcaagcagacagataaaccccga
cagccttgtccaccattggttcttcctctcagctcctggtacagtgagctcagcgtggct
ctctccatactgcgtaaagttgcagatgatccagctctggccactgaatggctgctgtcg
gtccgatcggccgtgtcgtccagccagcgcctgccctgctcgctcaccctcattgtgacc
tatctcatcatcatgggccgggaagacgtctgccagctggctttggacgcaagccaggcc
ttcgctgcagccgacccctgccaggtcccctccctcatccctgttctgttgttcaaactg
gggaaggacaagaatccaaacgtggctcatgctgtgctcaactgcctgccaaacctcggg
actcacaagctctgtgtccccatggtgctgcagactctccacatgctggccagcgccccc
aagctgagagcggtggcaatgcgcctcatgactgctctctggaagaaacaggaccgagtt
tacccggagctgcagcgtctgctgggtcagcaggatagcagggtggtggtagggagggac
gcccagtgggagcagatcctggccagggctgcctgcctaagggacatctgcagagagagg
ccgtaccagcatggaggtgacatgttggctgctattacgctaactctgaaccagtgcacc
agaccagacatggcaaccccagctgctctcgccctgcaaggactacaggagctgtgccgg
gcagaggtcgtggacatcatctcaacatggaggcgtctcgggccagagctcagctgtgaa
tcccgtccactgatggtcaaagctgtagctgagcttctggctctggttccccagctcact
gttaaatcagaagagtatgagaaactgaaagtggaggtggtcagctttctgtggaattat
gctgtgagcaaggatccagaggtggccagctgtggctacaaggctttggcagaatttcct
gaagcggctcacacaataactctcctccctgaggcagccaggccagctacaaagctccct
gaaaaagaggaggaggacaaaggggaggagaaagaggaggaggagaaggatctgtccatc
ccaggatcgtcttatgtgaaactgatggctctcactcctgtgtctgttctcccagccttt
gagttcttcttgacatccctggtgaagcaggagatgagcaggatgccacggggggtgtac
ttctctgccctgaggggggggaacctgcgttcggaccagggtaaaacggtggctgggatc
cccgcgttcatgctgaagacctacgagaaaaacaagcagcctgggctgaagcctggacta
gcagctggactgctgctcagttatgagctgcctgtgcagacggaccgcaccggcaaaccc
atcgatcgcttccttatcagccgctgccgcagcttccagcagaccctgacagccctcatc
cacgaggtgaacatccagccgtctgagtggcacagatccctcctgttaccccaggcctgg
aggggtttcatgagccgagcgttccatgctgtcttgcagggtcgacgtgctgacatggag
atgcagcagaaacaaggcaaagagaatccagaggagctgcagtacaaacagcactgtgcc
tggctgtgggccagagatcagctgacagacgtcatcaaagtcgctacaaaggacagtcct
gtggttcagggaaactccatcctggctttgagcggcctggcctctgtcctcgccaagtat
gagagcaaccttcctgttgacagcgacggcagcctcggggctggaccagagtttgttccc
acagccagctggttgtccatggtgctggagacgctgctaagcatcatcagcagcagctac
agagccaggggacaggttttcccatggttcatgcatcgctcctattcaggtgagaacaca
gcgagtgccatcgcccgctcctgtgccagcctggcgttgtccttgctggttcccgtgctg
gtggtgtggcagagggacggcctggtcaaggtgctgaccgctctgaaggccggcctgccg
ggctcgaccactgctgacgactcgcaggccgtccagttccactccggcctcgcactgggc
atggtgctgaccagtctgcaccaccaacgcctcggtgacgtctctgtgcagaaggacact
gatcttctcctcagctctctggatgctctaaaaggctgctccttcaactccgacctggaa
tacaataccggctgcatgttgggtctaggcctggtgctggcagctctctgcagcagtgga
cagaaggaacaacacgtccatgtcacccaaactctggacaaactgctctcagacctgcag
gacagcagtgggcagggacgcatgctgcaggaggtcttggcgtatgcagtggcgtgtgtg
ggcgtctcggccttcagtggaggcctcatagatgctgccaaggctgaggaggtcatgaac
actgtgcgcaccctgacggaggagagccagcagaccccagggttttctctggctctaggg
ctggtggtccacggcctgtcgctgtccggtcacggtaaagcagtggacattcaccctcga
ctcctggctgcttggatcaagatcttactggctgagggttgtcctactatgcagcgactg
gctgctgtgaacggcctggtggctttagtgggatctgagagttacctcattcagttaaaa
agtgagttggagctttcctcccagcagcagagccgactcaatgaggtcattcgagccatc
acacagatcctcacgttctcaggcgccatcggtttacagtccaacagcgcctgtctggtg
ggtcacttgcatttggcccacatgtccaccagccacagtcacacagcagtcccacaggac
ttcagttacctcccagagaaaagcgtcatcagatccatcattgactttgtctcagaggct
ggaaagaaaggtccagagttctctcctctggctctggtgaagacggctctgacctcgctg
gcatcggttggagccagtttccagtacccccccattaactggagcgctgtgctgtctcct
ctgatgaggctcagcttcggagaggatgtacagcatcagtgtgtggtactggcagcgtgt
caagctcagtcttcccagagtgcatctctctttctgggctcctggctgtcaccgccgctt
gtgcacagtctcagtcatcagacccgggctcacctctttgagaccctgggcatgtggatg
aagcacgtcgccgaggacaagctccagatcttcgtggagagtctgggcctgcagcagttt
caggaggaccttcgaccccagcgtctgtcgctgtgccgctctctcctgcagggtctcgcc
aaggccatggccctcccgaacccccccagtaactgctgggcaatcctctgctccaccacc
gagaagatcttcagcctcctgcccaatgaaatccaggatgatgaagtggacttgtacatg
ggagtggccaaatgtctgtctgagatgtccgatacagaaattgatcgaatagccaaagtc
acagagggtcagatggagaaaacgtgcttcgtcttggcttacctgacttcccaaggcaga
gttcccctgctgggtctcaatgacatcattgccggcgtgcttcgcggttggccgagccgc
agagtcggctggctcctcctgcaaacgttctaccagtgtcgcctggcctccggctccaac
acaggcgtctccaaacgaatggaatggctcctggagttgatgggccacatccgaaatgtc
gcctatggtgtcacctccgtctcatgtggagacagcagaatggccacagacttcctgttc
caggtctttgctgctgctgtggtttcctggggggaccacttcatgcccctcctgctcggc
atcagggcccagtggttcccgtggcaactgggctccaagcctcgcgccctgcaccatagt
ctgtacggacaggagtcgctcactgaccacgccctgccacagtgcctgctgggagtgtcc
cacagcttggccctgcttctggacaaagagccttggagcagccagacacaaaagttcata
gactggcttctcagcatcacagaaggtcctgaacagagtctgtcgactgaaaccatcaat
acagccaaagctgccctgttggccctgaagtcctccgctgagttcgagaagaaaactgtg
tggacccgagcgtacggctggtag
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integrated database retrieval system