Pleuronectes platessa (European plaice): 128430075
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Entry
128430075 CDS
T09923
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pplt00536
]
128430075
Glycosaminoglycan binding proteins [BR:
pplt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128430075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128430075
NCBI-ProteinID:
XP_053272003
LinkDB
All DBs
Position
23:complement(8285275..8420179)
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AA seq
682 aa
AA seq
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MEKVEPEKRGHHRTTLLNIISSLCSVASVAFCVLLSINAADIRHRVVDLESVNGGQTLIR
APGSSMDDLSSLVQQRVDELLSQRSYENLIKIRTARQTSPECNCPPGPPGKRGRRGRDGE
PGTPGTPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGP
PGPPGPRGPPGDTGKDGPRGVPGLAGDLGQPGDIGPAGPEGPEGQKGSLGLPGSPGEDGL
KGDVGIPGLDGIPGIKGEIGERGEKGDMGEDGPKGDTGEKGDAGSSAAGIKGEPGESGRS
GHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGEIGFVG
PKGSQGETGTPGYKGSKGETGDKGDLGTFGPKGPPGQKGDQGATEIIDYNGNIQEALQKI
TTITVTGPPGPPGPIGPQGGKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGEKGGTGLT
GLPGVNGVKGEKGDLGLPGIQGPSIIGSPGPLGPHGPPGPMGPHGFSGSKGEPGLHGLKG
MRGEPGHKGDRGPLGLPGSSGLDGKPGIGGTDGPSGPAGPAGPKGDIGERGTQGEPGPRG
PYGLPGAAGTPGLDGLAGLRGEKGDDGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCP
LGPDGLPIPGCWQKGITPWLVA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtggagcctgagaagcgagggcatcaccgcacgacactgctgaacattatc
tcgtctttgtgttcggtggcgtccgtcgcgttctgcgtccttctgagcattaacgcagcg
gacattcggcaccgggttgtggatttggagagtgtgaatggcgggcagaccttgatccgc
gcccccggttcctccatggacgatttgagctccctggttcaacagagagtggatgagctg
ctctcgcagcgctcctatgaaaatttgatcaagattcggactgccagacaaacatcacct
gaatgcaactgccctccaggacctccgggaaagcgaggaagaagaggccgcgatggagaa
cctggaactcctggtactccaggtccaaagggtgaaaagggcgatcaaggcgaccaggga
ccacggatggtcttccctaagatcaatcatggctttctttccgctgaccagcagctcata
aagcgacgtctcattaagggagatcaggggcaggcgggaccgcctgggcctccggggcca
ccgggccctccggggccgagggggcctccaggggacacggggaaagatggacccagaggt
gtgcctggtctagcaggtgatctggggcagcctggagatataggacctgcggggcctgag
gggccagaggggcaaaagggttcccttgggcttcctggaagcccaggtgaagatggactg
aagggggatgttggaatcccaggattggacggtatccccggaatcaagggtgaaatagga
gagcgaggtgaaaagggtgacatgggagaggacggtccgaaaggcgataccggggagaag
ggagatgcaggctcctctgcagctggcatcaagggtgaacctggagagtccggacgaagt
ggccacaagggagagccaggacttccagggctgcctggactcccagggataaagggcgag
cctgggttcctcggcccccagggagagccagggcttcccggactcccggggacgaagggt
gagaggggagaccacgggccaccagggaagggtgagcgtggagaaattggatttgttggc
ccaaaggggtcacaaggagagacgggaacacctggttataaagggtcaaagggggagact
ggagataaaggagacttgggaacattcggcccgaaggggccccccgggcagaaaggagac
caaggagccactgagatcatcgactacaatggaaacatacaggaggctttacagaagatt
accactattacagtaacgggtcctcctgggcctccggggccaatcggacctcagggtgga
aagggggatcgaggtctgcctggtctccctggactcgatggagaaagaggctataagggt
tcaaaaggagacatgggaatgcctggagcttcaggagagaaaggaggaactggtttaact
ggtctacctggtgtgaatggggtcaagggagaaaagggcgacctgggtctacctggtatt
cagggtccttccattattggctctccagggcctctagggccccatggaccaccaggaccc
atgggaccccacgggttctccggatcgaagggtgaacctggattgcatggtttgaagggg
atgcgaggggaaccgggtcacaaaggggatcgtggacctctgggtctccctggatcctcc
ggcttggacggcaagcccggaattgggggaacggatggaccgtcgggtccagctggtccc
gctgggccaaagggggacataggtgagagaggaacacagggtgagccaggaccgagggga
ccttatggactacctggagctgctggaacaccaggcctggatgggttggcaggcttaagg
ggagagaaaggcgacgatggggaaagaggagaaaagggggagaagggaaagaagggcaaa
aaagggcctaagggggagaaaggagaacagggtgcccctggattagatgcaccctgccca
ttgggcccagatggattaccaatacctggatgctggcagaagggaatcacgccgtggctg
gtagcctga
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