Pleuronectes platessa (European plaice): 128436564
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Entry
128436564 CDS
T09923
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128436564 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128436564 (parn)
Enzymes [BR:
pplt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128436564 (parn)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128436564 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
RRM_NFXL1
Motif
Other DBs
NCBI-GeneID:
128436564
NCBI-ProteinID:
XP_053274302
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All DBs
Position
3:6641676..6649453
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AA seq
685 aa
AA seq
DB search
MELTRRNYKGCLKTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQAKSKYIIKPFNFYVFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCDGIPYLNQEEEAQLREQTEERRNQQANGLGTPSFISPSSKGPAHVPEEHKDF
INRVIEKVETLFTNSEKTVNLEPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERFMQI
CRVDDEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTINQFY
CPLPEDLQDFKEVTMCVFPRLMDTKLMATTQPFKDLISNTSLAELEKQLKQTPFKSPQVE
TAEGYPSYDTAQEQLHEAGYDAYITGLCFVSMANYLGSFLTPPKPFISPRSKLIEPFHNK
LFLMRIIDIPYLNITGPDLQPKRDHVLHVSFPKEWKTSDLYQLFSAFGNIQVSWINDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEFIQGRDKDKVKPSTKSWGEDGWVKHHYTSS
TTSGFGYSRGLRKRSISPVQGEQGIGELVITDGWSQYSYPDSMGSKKMKTDDASGQANTD
AVESKTSEGWLRTTDTSDLAGLSLLPDEDEQQDEEGSPEGTDPVSDAEGTDTWQQAPAAN
ARKGQKKKTEAAESSTSLFDVPDVW
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggagctgacacgcagaaattacaagggctgcctgaagacggtgtacagcgccatagag
gaggcggactttctggccatcgatggcgagttttcaggtataagcgacggtcccaatgtc
agtgcgctgaccaacggactggacaccccggaggagcggtacaccaagctcaaaaagcac
tccatggactttctgctgttccagtttggattatgcacgttcaagtacgaccaggcgaag
tcaaagtatatcataaagccttttaatttctatgtattcccgaaaccattcaacaggacg
tcccccgacatcaagttcatctgtcaaagttccagcatcgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtgatggaatcccatacctgaaccaagaggaggaggcc
cagctgagggagcagacagaggagaggaggaaccaacaagctaacggcctcgggaccccg
tccttcatctccccgtcgtccaaaggcccagcacacgtacccgaagaacataaagacttc
atcaacagggtgatagagaaagttgagaccctcttcactaactcggagaagactgttaat
ttggagccgtgcacagggtttcagaggaagctgatctaccagaccctgaactggaagttt
cccaaggggcttcatgtggaaactgtggaaacagaaaagaaggagcgattcatgcagatc
tgcagagtagatgacgaggagaggaagaggagggagcagcagaaactggagagggaacag
gaggagctaaatgatgctgttggattctccagggtcatccacgccatctctaaatctggt
aaactcgtggtcggccacaacatgctcctggatgtgatgcacaccatcaaccagttctac
tgccctcttccagaggatcttcaagactttaaagaggtcacgatgtgtgtcttcccaaga
ctaatggacacaaagctgatggctactactcagccttttaaggacctgatctctaacacc
tctctggcagagctggagaagcagctgaagcagacgcccttcaagtccccacaagttgaa
accgcagaggggtaccccagctacgacacagcccaggagcagctccacgaggcggggtac
gatgcctacatcactggcctctgtttcgtctccatggccaactacctgggctctttcttg
actccaccaaaacctttcatttcacctcgatccaaactcattgagccattccacaacaag
cttttcctgatgaggatcatcgatattccctacctcaacatcacaggaccagatttgcag
cccaaacgagaccatgtcctccatgtctctttcccaaaagaatggaagactagtgacctc
taccagctctttagtgcctttgggaatatccaggtttcatggattaatgacacatcagca
tttgtgtccctgagtcaaacagaccaggtacagatagccatgaacaccagtcgctatgca
gagagctacaggatccagacgtacgccgagttcatccagggaagggacaaggacaaggtc
aagccaagcaccaaatcctggggcgaggacggctgggtgaaacaccactatacctcatcc
actaccagtggttttggatattccaggggtttgaggaaacgcagcatcagtccggttcaa
ggagagcaggggatcggagaacttgttattaccgacggctggagtcaatattcataccca
gatagcatgggcagcaagaagatgaaaactgatgatgcaagtggacaagcaaatactgac
gctgttgagagcaagacatctgagggctggctgaggacgacagatacatccgatttagcc
gggttgagtcttctccctgatgaggacgagcagcaggacgaggagggaagtcctgagggc
acagatccagtcagtgatgctgaagggacagacacctggcaacaagccccggcggctaat
gcgaggaaaggtcaaaagaaaaagactgaagccgctgagtcttccacttcgctgtttgac
gtcccagatgtctggtag
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