Pleuronectes platessa (European plaice): 128436568
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Entry
128436568 CDS
T09923
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03030
DNA replication
pplt03410
Base excision repair
pplt03420
Nucleotide excision repair
pplt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128436568 (rfc1)
03410 Base excision repair
128436568 (rfc1)
03420 Nucleotide excision repair
128436568 (rfc1)
03430 Mismatch repair
128436568 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pplt03032
]
128436568 (rfc1)
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128436568 (rfc1)
DNA replication proteins [BR:
pplt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128436568 (rfc1)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128436568 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
RuvB_N
AAA_30
Rad17
AAA_33
AAA_17
BRCT_2
AAA_14
AAA_7
AAA_16
AAA_18
Nexin_C
nSTAND3
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
128436568
NCBI-ProteinID:
XP_053274309
LinkDB
All DBs
Position
3:13714889..13724508
Genome browser
AA seq
1191 aa
AA seq
DB search
MDIRRFFQPTAVKPAVHKPAPNGTVKAEEKKKKNSKPLSPDDEVKQKKKPSNKVKSPKTE
EKRKDGEKKRKKPAVIESDSEEEEPVRKSKISAKEKQKSSKPAPPPKKDPVQYVSETDSD
SDNFHSLKKVSQTKHDETSKLRKSEEESARPGAKEVATPPAKSPSTRAKTGLKSPPVLVS
PKTPPPSKQTPTSVMDYFGTSTVQRSEKKLVASTKRKAPIQDTEDLISDEEIARQLQMSE
DMELEKQVHEDEEFAKTLAMLEEEPQAKKARKGSDEKQAQAAFPKKSCTDSAAGSPSRTP
TRIKSEDVISPTPKKNLSPVKASSKLAMMKKRDEESATGSKRKTLISPSKIKTSPKKEPI
ASSSSHMKFTPKTGTTPTALKTSPKEPESTTTSPDDAEKKKGNPSAFRNYLNRDGPRALG
SKEIPTGAENCLEGCVFVLTGVLESMERDDTKSLIERYGGKVTGNLSKKTTYLVQGRDSG
LSKLDKAESFGTKILDEDALLELIRTKPGKKSKYEIAAEAESKASKTKTPPSRTSKSTPK
AQKISPSKGNSRSPQTPSPSKTGLAQGHGRSTRSGGTPPGRGTGHTARRELGLSSSCSTS
APTPSISSSRTAEDASMLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWHKNHSGTVS
KAPGAVRFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCARSKN
TLKQVIAESLNNTSIEGFYKGTSNTVSSKHILIMDEIDGMAGNEDRGGIQEMIGLIRSSK
IPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLTFKEGIKIPPPALNEIIL
ASNHDIRQVIHNLSMWSVKEKVMTYDQCKSDSASARKDMKLGPFDVCRKVFALGEETSHM
SLIDKSDLFFHDYSLAPLFVQENYLHVRPAAASGDLKSHLVLLSKTADSISDGDLVDRQI
RSRQNWSLLPTQAIYASVLPGELMKGYMSQFPTFPSWLGKHSSTGKHSRIIQELNSHMSL
KTLSSRQAVNLDYLHYLRQALVSPLQRLGAEGAGPAVQLLDSYNLIKEDVDSIMEISVWG
GQPDPYSKLESKVKAAFTRAYNKEVHLTPYSLQIVKKGRAGGAAGGGGGESELGGEDMDN
GRHESEEEGESLKADAMIKQKKAKATKESKEKKEDSGKGKGKGKGKGKAKK
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcgcttctttcaaccgactgcagtgaaacctgcggtgcacaagccggcg
ccaaatggaaccgtgaaagctgaagagaagaagaagaagaatagcaagccgctgtctcca
gatgatgaagtgaagcagaaaaagaaaccgagcaacaaggtcaaaagccccaaaacagaa
gagaaacgcaaggatggtgagaaaaaacgaaagaagcctgccgtcatagagtcggactcg
gaagaggaggagccagtcaggaagtcaaagatatctgccaaagagaaacagaagagcagc
aagcccgcgccgcctcctaaaaaagatcctgtgcaatatgtctctgagacagactcagac
agtgacaactttcactccttgaagaaggtttctcaaaccaagcatgacgaaacgtccaaa
ctgaggaagtcagaggaagagagtgctcgtccgggggccaaagaggtggcgacacctccc
gccaagtcgccctccacgagggcaaagactgggctcaagtctcctccagtgcttgtatcc
cccaagacgcctcctccgtccaaacaaacccccacctcagtgatggactacttcggcacc
agcactgttcagcgctcagagaagaagctggtagccagcaccaaacgaaaggctccaatt
caggacacggaagatctgatcagtgatgaggagattgccagacagctgcagatgagtgag
gacatggagctggaaaagcaggtccatgaggatgaggagtttgccaaaacactggccatg
ctggaagaggagccccaggccaagaaggctcgtaaaggctctgatgaaaaacaagctcaa
gctgcattccccaaaaagagctgcacagactctgctgctggcagcccgagcagaacaccg
accaggatcaagtctgaagacgtaatcagtccgactcctaagaagaacctttcccctgtc
aaagccagctccaaactggccatgatgaagaaaagagatgaagagagcgccacagggtct
aagaggaagaccctcatttcaccctcaaaaattaaaacctctcccaagaaggagcccatc
gcttcatcgagctcacacatgaagttcacacccaaaacaggaacaactcccacggcactt
aaaacatctcccaaggaaccagagagcacaaccacaagtcctgatgacgctgagaagaag
aaaggtaacccgtcagctttcaggaactacctcaacagagatggaccacgagctctgggc
tccaaggaaatcccaacgggagcagagaactgtttggagggctgtgtgtttgtgttgacg
ggggtcctcgagtctatggagagagatgacaccaaatccctcatcgagcgctacgggggc
aaggtgacgggtaacctcagcaaaaagaccacctacctggtgcagggcagggacagcggg
ctctccaaactcgacaaggccgagagttttggaaccaagatcctggacgaggacgctctg
ctagagctgatcagaaccaaaccagggaagaagtccaagtatgagattgctgcagaggca
gagagcaaagcttccaaaaccaagactccccccagccgaacgtcgaagagcacccccaaa
gcccagaagatctccccttcaaaggggaattccaggtctcctcaaaccccgagcccgtca
aagactggcctggcacaaggtcacgggagatcgaccagaagtggcggcaccccacctggc
agaggcacaggtcacacggcccggagggagctgggcctttcctcctcatgttcaacttca
gccccaacaccatcaatatcctcatccagaactgcagaggacgccagcatgctgtgggtg
gacaagtaccgcccgcgctctctgaagactgtgattggccagcagggggatcagagctgc
gccaataagctgctgcggtggctgcagaactggcacaaaaaccacagtggcaccgtttcc
aaggctccaggtgcagtaaggtttggcaagtttggagggaaagatgatggatcaggattt
aaagctgctctgctctctggacctccgggggtggggaagaccacgactgctgccctcgtc
tgtgaagagttgggcttcagctacgtggagatgaacgccagctgtgctcgcagcaaaaac
accctgaagcaggtcatcgcagagtcactgaacaacaccagcatcgagggcttctacaaa
ggtacgtctaatacagtgagcagcaaacatatcctgatcatggatgagattgacggcatg
gctggtaatgaagaccgtggaggaatccaggaaatgatcggcctgatcagaagctcaaag
attcctatcatctgcatgtgcaacgatcgtaaccatcagaagatcaggtcactcgccaac
tactgcttcgatctgcgcttccagaggccgcgagtggaacagattaagggagccatgatg
tcccttactttcaaagagggaatcaagatccctcctccagctctcaacgaaatcatcctg
gcttccaatcacgacatccgccaggtgattcacaacctgagcatgtggtccgttaaagaa
aaggtgatgacgtacgaccagtgcaagtctgactcggccagcgcccgcaaggacatgaag
ctggggccgtttgacgtttgcaggaaggtgtttgccttgggcgaagagacctcccacatg
agcctcatcgacaagtccgacctcttcttccacgactactcgctagctccgctcttcgtc
caagagaactacctgcacgttcgtccagcggctgccagtggagatctgaagtcccacctg
gtgttgctcagcaaaacagcggattccatctcagacggagatctggttgacagacagata
cgctctcggcagaactggtccctgctgccgacccaggccatctatgccagtgtgttacca
ggtgagctgatgaaaggctatatgagtcagttccccacatttcccagctggctcggcaag
cactcgtccaccggtaaacattcccgtatcattcaggagctgaactcacacatgagttta
aagacattgagcagcagacaggctgtgaacctggactacctgcactacctgaggcaggcg
ctggtgagcccactccagaggctcggagctgagggcgccggtccggccgtgcagctgctg
gacagctacaacctcatcaaggaggatgtggacagcatcatggagatcagcgtctggggc
ggacaacctgacccctactccaaactagagtctaaggtgaaggcagctttcacacgggcc
tacaacaaagaagttcatctcacaccctactcgctgcaaattgtgaagaaaggccgggct
ggtggtgctgctggtggtggtggtggggagtctgagctgggaggagaggacatggacaat
ggacgtcacgagtccgaggaggaaggggagagcctgaaagccgacgctatgatcaaacag
aagaaggcaaaggccaccaaggagtcgaaagagaagaaagaagattctgggaaggggaaa
ggaaaaggcaaagggaaaggcaaagctaagaaataa
DBGET
integrated database retrieval system
