Pleuronectes platessa (European plaice): 128436627
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Entry
128436627 CDS
T09923
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128436627 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pplt03021
]
128436627 (taf5)
03036 Chromosome and associated proteins [BR:
pplt03036
]
128436627 (taf5)
Transcription machinery [BR:
pplt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128436627 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
128436627 (taf5)
Chromosome and associated proteins [BR:
pplt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128436627 (taf5)
STAGA complex
128436627 (taf5)
TFTC complex
128436627 (taf5)
SAGA complex
128436627 (taf5)
SLIK complex
128436627 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
PEP5_VPS11_N
Beta-prop_Nup120_160
eIF2A
VPS8_N
Beta-prop_WDR35_TULP_N
PROPPIN
LisH_TPL
CDK5RAP3
Beta-prop_ELP1_1st
LisH_PAC1
VID27
Motif
Other DBs
NCBI-GeneID:
128436627
NCBI-ProteinID:
XP_053274390
LinkDB
All DBs
Position
3:22338031..22342819
Genome browser
AA seq
748 aa
AA seq
DB search
MAAIQGGVVDAAEEKDIKSEPSSDGWANNNASDGKVLPASPGSSAPAVGTKPAVGAPEDQ
QTLLAVLQFLKKNKLSESVDILRREAGLPEDSLKEADSSGAGSGGAAGGGDAEGADASSL
LSRVTVSSSAAVQAPTKASAGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKRFIETVLDC
HRAELSQVFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYADDLRILSSLTKKEHM
RGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWTIIQEHLYIDIFDGIPRGKSQ
IDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSMG
SKSKKQDPNAPVQTRIPLPELKDSDKLDKIMYMKESTKRIRVAPDNLPSICFYSFLNAYQ
GLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEK
TASESKILHGHSGPVYGISFSPDRNYLLSSSEDSTIRLWSLLTFTCLVGYKGHNYPVWDT
QFSPHGHYFISGGHDRVARLWATDHHQPLRMFSGHLADITCTRFHPNSNYVATGSSDRTI
RLWDVLNGNCVRILTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMFAELKGHT
DTIYSLKFSRDGEILASGSMDNTVRLWDATKAFDDLETDDFTAATGHVHIQENSQELLLG
TYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatacaaggtggtgtggtcgacgcggctgaagaaaaggacattaaatcggaa
ccatcgagcgatggctgggcaaacaacaatgcgagcgacgggaaggtgctccctgcgtcg
ccgggctccagcgcaccggccgtgggcactaaaccagcggtgggagccccggaggaccag
cagacgctgctggcggtgctgcagttcctcaagaagaacaaactctccgagtcggtcgat
attctgcgtcgcgaagcgggactaccggaggattcactgaaggaggccgactcctccggg
gcaggctcgggaggtgctgccggtggtggggacgcagaaggcgcggatgcgagctctctg
ctgagccgggtgaccgtgtcatcctccgccgcagtccaggcgccaacaaaagcctcagca
ggggaggatcagccagacgtcaacgtggtgctgtcagcgtacagccagcagggagacccg
cctctgtaccaggtttactacagcggcctgaagaggttcatcgagacggtgctggactgt
cacagagcagaactgtcccaggtcttctacccgctgtttgtgcacatgtatctggagctg
gtgtacaacaatcatgaaagtgaggccaaggctttctttgacaagtttagtggagaccag
gagtgttattatgcagacgacctgcgcattctgtccagcctaacgaagaaggagcacatg
agaggcaacgagacgctccttgacttccgcaccagcaagttcgtcctgcgcatctcccgc
gactcttaccagctgctgaagagacacctgcaggagcgtcagaacaaccagatctggact
attatccaagagcacctctacatcgacatctttgatggcattccccgcggcaagagccag
atcgatgccatgtccggcagcttggcgggagaggctaagcgagaggccaacaaggcgaag
gtttactatggattgctgaaggaaccggagatagagcttccacttgatgatgaggacgag
gaggcagagaatgaggagggtaaacccaagaagaagaaaccgaaaaaggacagtatgggc
tctaagagcaagaagcaggatccgaatgcacctgttcaaactaggatacctttgccagaa
cttaaggactcagacaaactggataagatcatgtacatgaaagagtccaccaagaggatc
cgcgtggcaccagataacctcccgtccatctgcttctactcttttctaaatgcatatcag
ggtttgactgcggtggacttcacagatgactccagcctgattgcaggaggctttgctgac
tcaacagtacgggtttggagtgtcacaccgaaaaagctccgcaaggtcaagtctgcagca
gacttgaatctgattgacaaagagtcggacgatgtgctggagaggatcatggacgagaag
acggccagtgagtccaagatcctccacggacacagcggcccagtgtatggcatcagcttc
agcccagacagaaactacttgttgtcgagctcagaagactctacgatcaggctgtggagt
ctcctaacattcacttgtctagtgggctacaagggccacaattacccagtgtgggacact
cagttttctccccatggacactattttatctccggaggacatgacagagttgcccgtctg
tgggcgacggaccaccaccagcctctacggatgttctctggtcatctagctgacatcacc
tgcacccgctttcatcccaactccaattatgtagctacagggtcgtcggaccgcaccatc
cgcctctgggatgtcctgaacggaaactgcgtccgtatattaactggtcataagggtcct
atccatgcactggctttctctcccaacgggaagttcttagcttctggagccactgatgga
agagttctcctctgggacatcggtcatggactgatgtttgccgagctcaaaggccacaca
gacaccatctattccctcaagttcagtcgggatggagagatcctggcctctggctctatg
gacaacacggttcgtctgtgggacgcaacgaaagcatttgatgatttagagacggatgac
ttcacagcagccacaggacacgttcacatacaagaaaactcacaagagctcctgctgggc
acctacatgactaaatccacacctgtcatacacctccacttcacccgcaggaacctgctt
ttggctgctggagcctacaatccatga
DBGET
integrated database retrieval system
