Pleuronectes platessa (European plaice): 128436910
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Entry
128436910 CDS
T09923
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt04510
Focal adhesion
pplt04512
ECM-receptor interaction
pplt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128436910 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128436910 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128436910 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pplt00535
]
128436910 (col9a1a)
Proteoglycans [BR:
pplt00535
]
Extracellular matrix (ECM) proteoglycans
Others
128436910 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128436910
NCBI-ProteinID:
XP_053274807
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All DBs
Position
3:1993983..2007308
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AA seq
687 aa
AA seq
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MSLSRICRASLLVILLQVLLICSAQRGPVGPRGPAGPPGVAGVPGVDGIDGDRGQDSTVN
GGPGPDGDNGKDGAAGAGGLPGADGPVGPPGDPGPVGSKGLKGDAGGRGTPGEPGVGPDG
LDGIPGTDGLPGELGKVGGPGARGKRGQVGLPGAAGPRGPAAVYQGEDLCPNACPSGLNG
HSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGLLGDVGAQGLPGPGGARGLPGILGSKG
DRGARGSLGGVGPQGIQGGPGDPGQRGAIGEAGPAGVSGDRGPQGIRGGPGPEGEAGLPG
PDGREGIPGLPGSKGLPGKNGAPGDGGLQGLPGLPGAYGQKGHAGGKGSTGDPGAAGLMG
SPGKQGERGEQGEVGPVGPRAGPGERGERGPEGPLGSPGARGGKGDPGLPGLPGPAGYRG
QTGDRGAVGLDGPGGEQGPAGSEGTAGDRGDLGEQGEGGEKGSTGPPGETGNKGPEGGRG
QPGKEGKSGQSGPRGMQGDGGVPGLPGSQGPAGKAPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGVSGLPGPPGPPGPPGSSGENGFPGHSGSRGLPGLKGPSGVMGRKGPKGDHGDRG
DRGHPARGPKGAPGAPGQSGEPGRPAYGSAGRDGERGPRGAPGMHGVPGPPGTAGLNGYC
ESSQCILAMVASPVSAKDSGMKGPNEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtccaggatctgtcgggcgtctttactggtgattttactgcaagtcctcttg
atctgctcggctcagaggggcccggtgggtcccagaggccccgcaggcccccccggagta
gccggcgttcccggagtggacggcatcgatggcgacagaggacaagactccacagtgaac
gggggaccaggtcctgacggcgataacggcaaagacggagctgctggagctggaggcctc
ccgggcgcagacggacccgtgggacctcctggagatccaggtccagtcggctcaaaggga
ctgaagggagacgctggaggacgagggacccctggagagcctggggtcggacctgatgga
ctcgacggtatccctggtacagacgggctcccgggtgaattgggcaaagttggcggccct
ggggcgagagggaagagagggcaggtcggacttcctggtgccgccgggcctcggggacct
gcggctgtttatcaaggagaagacctgtgtcctaacgcctgcccctctggcctcaatgga
cactctggtctccccggcatgaagggccacaaaggagtcaagggtgaatccggtgagcct
ggaagacaaggacacaagggggaggagggcgatcaaggcctgctgggagacgtgggagct
cagggactaccaggtccaggtggagcaagaggcctcccaggaatattgggctccaaaggg
gacaggggagctcgtgggagtttgggcggtgtgggtcctcaggggatccagggaggcccg
ggcgacccgggtcagagaggagccatcggtgaggctggaccggcgggagtgtcgggggat
cgaggaccacaaggaatcagaggagggccgggtcctgaaggagaagctggtttaccgggt
cctgatggtcgggagggaatccccgggctgccagggtccaagggtcttccagggaagaat
ggagctccaggtgacggcggcctgcagggacttcctggtttgcccggcgcttatggacag
aaaggacacgccggtgggaagggcagcacaggagatccaggagctgcaggactgatgggg
tccccggggaaacagggcgagcgtggcgagcagggagaagtgggaccagtcggacccaga
gccggaccaggtgaacgaggagaacgagggccagaggggcctctaggatcacctggagcc
cgggggggcaaaggggatccgggccttccaggacttcctggacctgctggttatcgtggt
cagacaggagacaggggagcggtcggtctggacgggcccggaggggagcagggaccagcg
ggttccgaggggacggctggagacagaggagacctgggagaacaaggagaaggtggagag
aaaggatcgaccggccccccgggagagacggggaacaaaggacccgagggtggacgagga
cagccagggaaagagggcaagtcgggccagtcggggccgcggggcatgcagggcgacggg
ggggtaccgggcctccccggatcccagggaccagcggggaaagctccgacagacacacac
atcaaacaagtctgcatgagggtgatgcaagagcagctggcccagctagcagccagcctg
agcaggcccgagtcaggagtctccgggctgcccggcccccccggcccgcctggacccccg
ggatcctctggagagaacggtttccccggacactccggatctcgaggactgccagggctg
aaggggccgtccggggtcatgggccgcaaaggacccaaaggtgaccacggggaccgagga
gacagaggacacccagcgagaggacccaaaggagcacccggagcgcccggtcaatcaggt
gaaccgggtcgaccggcttacggcagcgccggccgggatggagagcgtggaccccggggc
gctcccgggatgcacggcgtgcccgggccccccggcaccgcggggctgaacgggtactgc
gagtcgtcgcagtgcatcctggcgatggtggcgtccccggtgtcagcgaaggactccggc
atgaagggccccaacgagatgtga
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