Pleuronectes platessa (European plaice): 128437128
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Entry
128437128 CDS
T09923
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128437128 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128437128 (patl1)
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128437128 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
128437128 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
128437128
NCBI-ProteinID:
XP_053275136
LinkDB
All DBs
Position
3:30461171..30495582
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AA seq
834 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDVGLAAEEDEIDQFNDDTFGAGAIDDDWQEEHKRLANLDDRDGQ
GAEGGGGGGMERESDLGGTDDSTSSHLSTYAGHHPLPSSLPSLNFSSSSSGLPPPDVEDR
GGEGDLAESLARLILEADPAIAGVGATERPCPSLSSTASTRTTFHRLDQPRVLPQHSIPN
PTHSHQPPQHPQHQLTTGPSISGISLGPPSTSMLSYQQQQHMLRRGSAPIAQMNSHSIWE
NNMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKLPSRGRNDEGLDLSERVPPPRSSSPV
IGSPPVRAVPIGTPPKQPMSHSLNHQAHHPTAVHVRAPVQHRYPPPFPERLSPNTLLNLA
NSPLCRSPFPPGVVPVLSQIQRAKLLNSQVAGFVHGGPPPPLLPGGGVFRPFFGGPPPPH
GHRMGPLPPHGLPNHTPPIRHNTTHLHPQHRRMLTQRMQSRGGDHGRTGGDRHSRDPYSN
LMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEYTTKLITPQ
VAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYT
VEKMYSLLLEVQDFEKRFVQAPEEDREALLEQHKTNTVQLCNSLREKEWDDRVSDERCVM
IMSVRKGKRLISRLLPFLPSPQATAIVMAIARNLPALAKKDKQDQVLCWLVEPLSAVIQS
LSSSTITDLLQELQGSEGQLATVLHNKFGVTLLYLILSEGEKMQSSDPNCQLMDDNRWTE
LVFAVTRELLSVPSSSLSPPLITPANLLSLFSRYVDRQRLELLQNKLQISSLSR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgctggaggaggaagatgtgggattg
gcagcagaggaagatgaaatcgaccaattcaatgacgacaccttcggagctggggccatc
gatgatgactggcaggaggaacacaaacgcctagcaaaccttgatgatcgggatgggcaa
ggagccgaaggagggggaggaggagggatggagagagaatcagatttaggaggaacagat
gactcaacctcttcccatctctctacatatgcaggccatcatccccttccatcttctctt
ccgtcactcaacttctcctcatcttcctccggactgcctccaccagatgttgaggatcga
ggaggggaaggtgacttggcagagtccctggccagactcatcttggaggcagacccagcc
atcgctggggtcggagccactgagaggccctgtccatccctgagctccacagcatccacc
cgtaccactttccacaggttggatcaacccagagtcctgccgcagcactccatcccaaat
cccacccactcacatcagcctccacaacaccctcagcaccagctgactactgggccctcc
atctcaggcatctcccttggtcctccttcaacatcaatgctcagctaccaacagcagcag
cacatgctgcgcagagggtctgctccaatcgcccagatgaactctcacagtatctgggag
aacaatatggggttcgggccggtcagtgtcaccccaggacttgtcacgcacatggaggat
agtccactaatgtctatcatcaaagaggtgggccttcctaagttaccttctcggggtagg
aatgatgaaggattggatttgtcagagagggtaccaccacctcggtcttcttcccctgtg
attggttcccctccggtgagggctgtgcctattgggaccccgcccaaacagccaatgagc
cacagtctaaatcatcaggcgcatcatcccacagcagttcatgtgagagccccggtccag
cacagataccctcctccttttcctgagcgtctgtcccccaacaccctcctcaacttagct
aactctccgctgtgtcgcagtcccttccctcctggagttgttccagttctgtctcagatt
caacgggccaagctgctcaactctcaagtggctggttttgtccatggtgggccaccccct
cctttgttaccaggtggtggagttttcaggccattcttcgggggccctcctcctccacat
ggtcaccgaatgggcccactgccccctcatggtctccctaaccacacgccacccatccgc
cacaacaccacccacctccaccctcagcacagacgcatgctcacccagcgcatgcagagc
cgaggaggggatcatggcaggactggaggggaccggcacagcagagacccctacagtaat
ctgatgactcagaaggagaaagagtgggtaacaaagattcagatgatgcagctgcagagt
actgacccttaccttgatgactactactatcagaattactacgaaaagatggagaaacgg
caggaaagagagagagacagcagcaagaaagaatacaccaccaaactcatcacaccacag
gttgcgaaggttgaacacacctacagaccagttcagtttgcaggatctctgggtaaactg
acggtctctagtgtcaacaacccccgcaagatgattgatgctgtggtgaccactcgcaca
gacgacgaggagaaaagagagaagcaggtttggaataagaggcgacagatcctgtacact
gtggagaagatgtatagtttgctgctggaggttcaagactttgagaaacgttttgtccag
gccccagaggaggacagggaggctctgctggagcagcataaaaccaacacagtgcagctg
tgcaactctctgcgagagaaggagtgggatgatagagtaagtgatgagcgatgtgtgatg
atcatgtcagtgaggaagggcaagcggctcatatccaggctcctccccttcctgccctca
ccccaggccaccgccattgtcatggcgattgcacgcaaccttcctgccctggccaagaag
gacaagcaggaccaggtgctttgctggttagtggagcccctttcggctgtgatccaatca
ctctccagctccaccatcacagacctgctccaggagcttcaaggcagcgagggccaactg
gccacagtactgcacaacaagtttggtgtgacacttctgtatctgatcctgagtgaagga
gagaagatgcaaagttcagaccccaactgtcaacttatggatgacaatcgatggactgag
ttggtatttgctgtgacaagggaactgctcagtgttccctcctcgtccctctctcctccc
ctcattacccctgccaacctgctctccctcttctcgcgctatgtcgatcggcagaggctg
gagctgttacagaacaagttacagatctcttcattgtccaggtag
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