Pleuronectes platessa (European plaice): 128437288
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Entry
128437288 CDS
T09923
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
128437288 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pplt04121
]
128437288 (slx4)
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128437288 (slx4)
Ubiquitin system [BR:
pplt04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
128437288 (slx4)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128437288 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_4
zf-C2H2_jaz
zf-C2H2
zf-C2H2_6
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
128437288
NCBI-ProteinID:
XP_053275351
LinkDB
All DBs
Position
3:complement(20234532..20264402)
Genome browser
AA seq
1759 aa
AA seq
DB search
MDDSDQDFVDLASKLLKRVRKKPGEPRPPRRAEHQSASSQASEGNKRRRNDKKDGDSRPK
VTETQSVCSGTGCDSGDAGSLGGPSGARAERVLTAEDKVLLRMKQFRRASPQRLVHRDPT
PPAGHENDRTPNPPAPRQDPPQPSTSGLYPDSDEALALRLQQELDKEAAETEAVNLEDGG
LFFCQICHRDLSHMNPDGRTQHTNRCLDDSEESAPPPPPPPALPECPICGKTFKSQKSRS
THLKRCSSDMGVPPAVLLQALQRQAEETQNVPTVNTAHTQTGGTKRKGPSKPGVPAKKKP
RKKTDPLDEDTMVALALSSSLLEQNREAQLKTEVAAAHTFMTAVLKPDTGKGRRKKKKGA
IPRPPPLLLVQDAQAALVKLQERVSALLLHSRAPSPPTPTRSPSSLCGLSRAAPLWQKST
LLSSSFTCQSDFYTQELREFITPWETPKTAAAPLNAGNKSESSLRPLTEGTPVAGTSSSI
LPSSSQTAASSSAPSTPGTGQHPVGSQALRDLMELAEDGMTPTQCRYMTSGSDKNEQSRA
RVSTNLLEESEEQADLCVSGFLPEAAHTHSENTQRKSDEPRGDEERGSHRSVALSRLESD
LSSMVNNPQLSDVQIQVDSGDVYFAHSFMVYARCPLLAEMLHEGGFGVQEEGSSAAQRVL
MSDVPGQAVFALLQYLYTAHCSIPASLRPHILELASRFDLQELQQLCESPTPEQEADYTN
QGENINDQTDQAFMVLLRSMWNEEDEEDEGLDTDGGDDEERRLEEEDHQTDDVASGEREI
CEEQVNEEELEEIYEFAATQRKREEEKDTVEDDEEQEKVDDGEEELTEAKRDLSKKTPKP
NSQLEPDPSLDLTYSRLFSDTWGVYEEKDLSSLSPTTSSPPKTHTSHYQKHQSSHKPPCE
LSNRTLPQSSPGGFNDFSQSPPPSTSNLPVAGLSPGQVGELDVPEQCLSLKREGQGPRSI
CVPVSPDSPPKKKEPELIVLSDSSEDMEVDVPFLRRYSPSPHSPFAVQKLQSYTQIKPQS
ILKPTEPLMENKVSRSLELNPDPSAALGQGHPGSGYDPSPDCSPEVSWLIPSTPVQQEIC
NKTSSSRSSSTQTKSSICRTQLFPRGESSFSRSSLFYSPALPLHNTLHNSSSATVVSARV
GPTEGSVPRLNLEETAPCSSSFDLKFSPQRTSSYEGSKNREMSAVLPHKLTLSLLSSSSH
RLPLQAPSGEETPQHVQRLPYSSTPLHTGLRQLPVLLADSPLNSSLDKQRSTGQGGDRAS
SESLEKTELGSFHLSPLSSPSSSHRGLHSSQKHKSSSESQRSVESSSHENTGDKLKRRGI
KNEGTESVCKSKDSRDEGKQTEAKEESEEVEIALSSFQQSFMDEPPIAFNDSWGLDACVE
ANPGCFSLRLEDSGGSSQQERSLERKETTSADCHPPPSSHCMSSSSCGDLVNSSPSKAHS
AQPTTSAQAHRNASFTPSPPDTHNSFLNPQIWDSWEEEQEEALPLSWRLNPSAQLKTPVS
LHNKKHCPVVPITPMPHYSDMDTPDLKNKLNRFGVRPLPKRQMILKLKEIHQYTHQLVSS
DSEDEAPSAGPAAKRKPPPNTSSAAPGSQTVKFKEPSAPAAVSPLKQRAEEEEGELLSAS
QGSNTSSTAASEESGRSNPELCLTSDGDSDSDGGISASQAVTKLQDRLKAVRSFILSDSG
LYSQILQYQPLVLSQLQQRLKAAGIRLGAAKLMDYLDSQCITFTTAKPGHSAPSRRRGKR
PKAAGVRGAGRKKTVTISL
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgaccaggattttgtagatctcgcttccaagctgctgaaacgagtccgc
aagaaaccaggtgagccacggcctccacggagagcagagcatcagtcagcctccagccag
gcaagcgagggcaacaagaggaggagaaacgacaaaaaggatggtgactctcggccaaaa
gtcacggagacccagtctgtctgcagtgggactggctgtgactcaggagacgctgggtct
ttgggtgggccttcaggagccagagctgagagagtcctgacagcggaagacaaagtgctc
ctcaggatgaaacagttcaggagagccagtcctcagagattggtgcacagggacccgacc
ccgccagcaggccacgagaacgaccgcactccgaacccaccggcaccaagacaagatcct
ccacaacccagcacttctggtctctacccagacagtgacgaggcgttggccctgagactg
cagcaggagctggacaaggaggcagcagagaccgaggcggtgaacctggaggacggaggc
ctcttcttttgtcagatctgccacagggacctgtcacacatgaaccccgatgggcgaacg
caacataccaacaggtgtttggatgacagtgaagagagcgccccaccccctcctccaccc
cctgctctccctgaatgcccgatctgtggtaagacgttcaagtcccagaagagtcgctcg
acccacctgaagcgctgctcctcagacatgggcgtacctccagctgtcttgctgcaggct
ctgcagagacaggctgaagagacccagaacgtcccaactgtcaacacagcacacacacag
actggaggcactaaaaggaaaggcccttccaagcctggcgtcccagcgaagaagaagcca
aggaagaagaccgatcctctggatgaagacaccatggtggctctggctctatcctcctcc
ctgttggaacaaaacagggaggcacagctaaaaacagaggtcgctgccgctcacaccttc
atgactgcagttctgaaaccagacacaggtaaagggcgtagaaagaagaaaaaaggagcc
atccctcgtcctcctcctctcctgctcgttcaggatgctcaggcggccctggtgaaactg
caggaacgtgtctctgctctcctcctccacagccgggccccctctccccccaccccgacc
cgcagtcccagcagcctgtgtggcttgagcagggcggcccccctctggcagaaaagcaca
ctgctgagcagcagcttcacctgtcagtcagatttctacactcaggagctcagagagttc
attactccttgggaaaccccaaagactgctgcagcccctttgaacgctggaaacaagtct
gagtcttctctgcgacctctgactgaaggaactcctgtggcagggaccagttcctccatc
ctgccttcttcctcccagactgcagcctcctcctcggctccctccaccccgggcactggg
cagcacccagtgggcagccaggccctaagggacctgatggagctggctgaagacggcatg
acccccacacagtgcagatacatgacctcgggcagtgacaaaaacgagcagagcagagcc
cgtgtgtctacgaacctcctggaggagtcagaggagcaggctgacctatgtgtgagcggc
ttcctgccagaggcggcacacacacactcagaaaacacacagaggaaaagtgacgagcca
cgtggagatgaagagcgaggcagccaccgatcggtggcactatcgagactggagtccgac
ctgagcagcatggtgaacaaccctcagctcagtgatgtgcagatccaggtcgacagtgga
gacgtctactttgcccattccttcatggtgtacgcccgctgccccctgctggcagaaatg
ctacatgaaggaggtttcggggttcaggaggagggttcgtctgcagcccagagggtgttg
atgagcgacgtcccgggtcaggctgtgttcgctctgctgcagtacttgtacacggcccac
tgctccatcccagcctcactgcgacctcacatactagagctggcatcaaggttcgacttg
caggagctgcagcagctttgtgagtcaccgactcctgaacaggaggcagactacacgaac
cagggcgagaacatcaacgaccaaacagaccaggccttcatggtgctcctccgctctatg
tggaatgaagaggatgaagaagacgagggattagatactgatggtggagatgatgaggag
agaaggttggaagaagaagatcatcaaaccgatgatgtcgcatctggtgaaagagagatc
tgtgaggaacaggtgaacgaggaagagctggaggagatctacgagtttgcagcaacacag
agaaagagggaggaggagaaagacacagtagaggacgatgaagagcaggaaaaggtagat
gatggcgaggaagaactgacagaagctaaaagagacttgagcaagaaaactccaaagccg
aactctcaacttgagccagaccccagcctggatctcacctacagtcgcctcttctcagac
acttggggtgtctacgaggagaaagacctctcttccttgtcacctacaacctcaagccca
ccaaagacacacacctcacattaccagaaacaccagtcctctcataaaccgccatgcgaa
ctctccaacagaactttgcctcagtcctcaccaggcggattcaacgacttttcccagagc
cctccacccagtacgtccaacttgcctgttgcaggtctgtcccctggtcaggtgggggaa
ctggacgtgccagagcaatgtctgtctttgaagcgagaaggccaaggtcctcgtagtatt
tgtgttcctgtttctcctgattcaccccccaaaaagaaggagccggagctcatagttttg
tccgactcaagcgaggacatggaggtagatgtcccttttctaagacgctacagtccttcg
ccacattctcctttcgctgtccagaagctgcagagttacactcaaatcaaacctcagtca
atcctgaaacccacagaacccctcatggagaataaagtgtcccgtagtttagagttaaat
cctgatccatctgcagccttgggtcaaggtcatccaggttccggttatgatccgagtcca
gactgttcccctgaggtctcctggttgatcccatccacaccggtgcagcaggaaatatgc
aataagaccagctccagcaggtccagctccacccagaccaaaagcagcatttgcaggaca
cagctgttccctagaggcgaatcgtctttttcacgctcttctctcttctattcccctgct
ctaccacttcataacacacttcacaactcgagcagtgcaaccgtagtttctgcccgcgtt
ggcccaacagagggcagcgttcccaggttgaacctggaagagacggctccctgtagctcc
agcttcgatctcaagttttcccctcaaagaaccagtagttatgaaggaagtaagaacaga
gaaatgtctgcagttctcccgcacaaacttacactctcactcctctcaagctcatctcac
cgtcttcccctccaagctccctcaggggaggagacaccccagcacgtccagcggctgccc
tacagcagcactcccctgcacacagggctccgacagctccctgttcttcttgctgactcc
ccgctcaacagcagcctcgacaagcagaggtcaaccggtcaagggggggatagggcgtca
tctgagagcctagagaagacagagctagggagctttcatctctccccattgtcctccccc
tcttcatctcacagaggtcttcatagttcacagaaacataagtcctccagtgagagtcaa
cgttctgttgagtccagcagtcatgagaacacaggggataagctcaaaagacggggaata
aaaaatgaggggacagaaagcgtgtgcaaaagtaaagactcacgtgatgaaggaaaacag
acggaggcaaaagaagaaagtgaggaggtagagattgccctgtccagtttccagcagagc
ttcatggacgagcctcccattgctttcaatgactcgtggggcctggatgcctgcgtggaa
gcgaaccccggctgcttcagtctgaggctggaggacagcgggggatccagccagcaggaa
cgaagcctggaacgaaaagaaacgacctctgctgactgtcatcctccaccatctagtcac
tgtatgtcatcgagcagctgtggcgatttggtgaactcctctccatctaaagcccacagt
gcacaacctaccaccagcgcacaggctcatagaaacgcttccttcaccccgtcaccacct
gacacgcacaacagcttcctgaacccccaaatatgggacagctgggaggaggagcaagag
gaggctcttcctctctcttggaggttgaacccttctgctcagctcaaaacgccagtatca
ttgcacaataagaagcactgccccgtggtgcccatcactcccatgccccactactctgac
atggacacaccggatctcaagaacaaactcaacaggtttggcgttcggcctttacccaag
cgccagatgatcctcaaactgaaggagatccaccagtacacccaccagctggtcagttca
gactcggaggacgaggcaccctctgcggggcctgctgctaagaggaagcccccccctaac
accagttcagcggctcctggcagccagacagtgaagtttaaagagcccagtgcgccggct
gccgtctcccctctcaaacagcgagcagaggaggaggagggagagctgctctctgcctca
caggggtccaacacctcctcaacagccgccagtgaagagtctggaaggtccaatccagag
ctatgcctcacttccgatggcgactcagacagtgacggcggcatctctgcctcccaagct
gtgactaaacttcaggatcgcctcaaggccgtgcgttcattcatcctgtcggactcgggg
ctgtacagtcagatcctccagtaccagcctctggtcctctcccagctccaacagcggctg
aaggcggccgggatccgcctgggcgccgccaagctgatggactacctggactctcagtgc
atcaccttcaccacggccaagccaggccactctgcacccagccgcagacggggaaagagg
ccgaaggcagcgggtgtaagaggagcaggccggaagaaaactgttacaatttctctttaa
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integrated database retrieval system
